2.400 Å
X-ray
2015-11-10
Name: | Type 4 fimbrial biogenesis protein PilM |
---|---|
ID: | G3XD28_PSEAE |
AC: | G3XD28 |
Organism: | Pseudomonas aeruginosa |
Reign: | Bacteria |
TaxID: | 208964 |
EC Number: | / |
Chain Name: | Percentage of Residues within binding site |
---|---|
B | 100 % |
B-Factor: | 66.544 |
---|---|
Number of residues: | 39 |
Including | |
Standard Amino Acids: | 37 |
Non Standard Amino Acids: | 1 |
Water Molecules: | 1 |
Cofactors: | |
Metals: | MG |
Ligandability | Volume (Å3) |
---|---|
0.512 | 1987.875 |
% Hydrophobic | % Polar |
---|---|
45.67 | 54.33 |
According to VolSite |
HET Code: | ADP |
---|---|
Formula: | C10H12N5O10P2 |
Molecular weight: | 424.177 g/mol |
DrugBank ID: | - |
Buried Surface Area: | 60.54 % |
Polar Surface area: | 260.7 Å2 |
Number of | |
---|---|
H-Bond Acceptors: | 14 |
H-Bond Donors: | 3 |
Rings: | 3 |
Aromatic rings: | 2 |
Anionic atoms: | 3 |
Cationic atoms: | 0 |
Rule of Five Violation: | 1 |
Rotatable Bonds: | 6 |
X | Y | Z |
---|---|---|
-22.9305 | 129.591 | 47.643 |
Represent the protein/ligand binding mode, centered on the ligand
Dashed lines represents hydrogen bonds and metal interactions
Green residue labels for amino acids with hydrophobic contacts (green lines) to the ligand
Ligand | Protein | Interaction | |||
---|---|---|---|---|---|
Atom | Atom | Residue | Distance (Å) | Angle (°) | Type |
O2B | OG1 | THR- 20 | 3.47 | 140.22 | H-Bond (Protein Donor) |
O1B | NZ | LYS- 23 | 3.94 | 0 | Ionic (Protein Cationic) |
O2B | NZ | LYS- 23 | 3.92 | 0 | Ionic (Protein Cationic) |
O1A | NZ | LYS- 23 | 3.96 | 0 | Ionic (Protein Cationic) |
C5' | CB | ALA- 202 | 3.41 | 0 | Hydrophobic |
O5' | N | GLY- 296 | 3.39 | 137.63 | H-Bond (Protein Donor) |
O1B | MG | MG- 402 | 1.86 | 0 | Metal Acceptor |