2.400 Å
X-ray
2015-11-10
| Name: | Type 4 fimbrial biogenesis protein PilM |
|---|---|
| ID: | G3XD28_PSEAE |
| AC: | G3XD28 |
| Organism: | Pseudomonas aeruginosa |
| Reign: | Bacteria |
| TaxID: | 208964 |
| EC Number: | / |
| Chain Name: | Percentage of Residues within binding site |
|---|---|
| B | 100 % |
| B-Factor: | 66.544 |
|---|---|
| Number of residues: | 39 |
| Including | |
| Standard Amino Acids: | 37 |
| Non Standard Amino Acids: | 1 |
| Water Molecules: | 1 |
| Cofactors: | |
| Metals: | MG |
| Ligandability | Volume (Å3) |
|---|---|
| 0.512 | 1987.875 |
| % Hydrophobic | % Polar |
|---|---|
| 45.67 | 54.33 |
| According to VolSite | |

| HET Code: | ADP |
|---|---|
| Formula: | C10H12N5O10P2 |
| Molecular weight: | 424.177 g/mol |
| DrugBank ID: | - |
| Buried Surface Area: | 60.54 % |
| Polar Surface area: | 260.7 Å2 |
| Number of | |
|---|---|
| H-Bond Acceptors: | 14 |
| H-Bond Donors: | 3 |
| Rings: | 3 |
| Aromatic rings: | 2 |
| Anionic atoms: | 3 |
| Cationic atoms: | 0 |
| Rule of Five Violation: | 1 |
| Rotatable Bonds: | 6 |
| X | Y | Z |
|---|---|---|
| -22.9305 | 129.591 | 47.643 |
Image generated by PoseView
Represent the protein/ligand binding mode, centered on the ligand
Dashed lines represents hydrogen bonds and metal interactions
Green residue labels for amino acids with hydrophobic contacts (green lines) to the ligand
| Ligand | Protein | Interaction | |||
|---|---|---|---|---|---|
| Atom | Atom | Residue | Distance (Å) | Angle (°) | Type |
| O2B | OG1 | THR- 20 | 3.47 | 140.22 | H-Bond (Protein Donor) |
| O1B | NZ | LYS- 23 | 3.94 | 0 | Ionic (Protein Cationic) |
| O2B | NZ | LYS- 23 | 3.92 | 0 | Ionic (Protein Cationic) |
| O1A | NZ | LYS- 23 | 3.96 | 0 | Ionic (Protein Cationic) |
| C5' | CB | ALA- 202 | 3.41 | 0 | Hydrophobic |
| O5' | N | GLY- 296 | 3.39 | 137.63 | H-Bond (Protein Donor) |
| O1B | MG | MG- 402 | 1.86 | 0 | Metal Acceptor |