2.400 Å
X-ray
2012-01-31
Name: | Ribosomal oxygenase 1 |
---|---|
ID: | NO66_HUMAN |
AC: | Q9H6W3 |
Organism: | Homo sapiens |
Reign: | Eukaryota |
TaxID: | 9606 |
EC Number: | / |
Chain Name: | Percentage of Residues within binding site |
---|---|
A | 100 % |
B-Factor: | 48.804 |
---|---|
Number of residues: | 25 |
Including | |
Standard Amino Acids: | 25 |
Non Standard Amino Acids: | 0 |
Water Molecules: | 0 |
Cofactors: | |
Metals: |
Ligandability | Volume (Å3) |
---|---|
1.030 | 1255.500 |
% Hydrophobic | % Polar |
---|---|
30.65 | 69.35 |
According to VolSite |
HET Code: | PD2 |
---|---|
Formula: | C7H3NO4 |
Molecular weight: | 165.103 g/mol |
DrugBank ID: | - |
Buried Surface Area: | 69.45 % |
Polar Surface area: | 93.15 Å2 |
Number of | |
---|---|
H-Bond Acceptors: | 5 |
H-Bond Donors: | 0 |
Rings: | 1 |
Aromatic rings: | 1 |
Anionic atoms: | 2 |
Cationic atoms: | 0 |
Rule of Five Violation: | 0 |
Rotatable Bonds: | 2 |
X | Y | Z |
---|---|---|
-24.9385 | -51.344 | -8.01417 |
Represent the protein/ligand binding mode, centered on the ligand
Dashed lines represents hydrogen bonds and metal interactions
Green residue labels for amino acids with hydrophobic contacts (green lines) to the ligand
Ligand | Protein | Interaction | |||
---|---|---|---|---|---|
Atom | Atom | Residue | Distance (Å) | Angle (°) | Type |
C5 | CB | PHE- 337 | 3.77 | 0 | Hydrophobic |
O42 | NZ | LYS- 355 | 2.66 | 176.16 | H-Bond (Protein Donor) |
O42 | NZ | LYS- 355 | 2.66 | 0 | Ionic (Protein Cationic) |
O41 | NZ | LYS- 355 | 3.86 | 0 | Ionic (Protein Cationic) |
O21 | NE2 | HIS- 417 | 2.9 | 167.95 | H-Bond (Protein Donor) |