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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
4diq PD2 Ribosomal oxygenase 1

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
4diq PD2Ribosomal oxygenase 1 / 0.767
1jsz NDMCap-specific mRNA (nucleoside-2'-O-)-methyltransferase 2.1.1.57 0.744
1i7c MGBS-adenosylmethionine decarboxylase proenzyme 4.1.1.50 0.660
3ict ADPCoenzyme A disulfide reductase / 0.660
2oli IOPBasic phospholipase A2 VRV-PL-VIIIa 3.1.1.4 0.659
5d4v YGPUncharacterized protein MJ0489 / 0.658
2kwi GNPRas-related protein Ral-B / 0.655
2opn SUFFarnesyl pyrophosphate synthase 2.5.1.10 0.653
2gs7 ANPEpidermal growth factor receptor 2.7.10.1 0.652