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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Cavity similarities measured by Shaper
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Cavities are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299

Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3rpv26ZCyclin-dependent kinase 22.7.11.22

Complex with similar cavities

PDB ID HET Uniprot Name EC Number Cavity
Similarity		 Align
3rpv26ZCyclin-dependent kinase 22.7.11.221.000
3qtuX44Cyclin-dependent kinase 22.7.11.220.661
3qu0X40Cyclin-dependent kinase 22.7.11.220.634
3r9dX6BCyclin-dependent kinase 22.7.11.220.634
2b52D42Cyclin-dependent kinase 22.7.11.220.632
3qtxX43Cyclin-dependent kinase 22.7.11.220.613
3rk909ZCyclin-dependent kinase 22.7.11.220.612
3rjc06ZCyclin-dependent kinase 22.7.11.220.603
3rak03ZCyclin-dependent kinase 22.7.11.220.593
4acm7YGCyclin-dependent kinase 22.7.11.220.587
2xmyCDKCyclin-dependent kinase 22.7.11.220.585
3qtrX36Cyclin-dependent kinase 22.7.11.220.579
2btrU73Cyclin-dependent kinase 22.7.11.220.573
3r1sX73Cyclin-dependent kinase 22.7.11.220.569
3rk708ZCyclin-dependent kinase 22.7.11.220.562
3rni21ZCyclin-dependent kinase 22.7.11.220.560
4fks46KCyclin-dependent kinase 22.7.11.220.559
1y91CT9Cyclin-dependent kinase 22.7.11.220.551
3rm618ZCyclin-dependent kinase 22.7.11.220.551
4ek816KCyclin-dependent kinase 22.7.11.220.550
4fkv61KCyclin-dependent kinase 22.7.11.220.549
3lfnA27Cyclin-dependent kinase 22.7.11.220.547
3r9hZ67Cyclin-dependent kinase 22.7.11.220.547
1pxmCK5Cyclin-dependent kinase 22.7.11.220.546
3iggEFQCyclin-dependent kinase 22.7.11.220.546
3sw418KCyclin-dependent kinase 22.7.11.220.545
3qwjX6ACyclin-dependent kinase 22.7.11.220.543
2c6iDT1Cyclin-dependent kinase 22.7.11.220.542
2r3lSCWCyclin-dependent kinase 22.7.11.220.542
3rmf20ZCyclin-dependent kinase 22.7.11.220.542
3py0SU9Cyclin-dependent kinase 22.7.11.220.541
4ez30S0Cyclin-dependent kinase 22.7.11.220.541
3qtzX42Cyclin-dependent kinase 22.7.11.220.540
2c6o4SPCyclin-dependent kinase 22.7.11.220.539
3qzgX67Cyclin-dependent kinase 22.7.11.220.539
3r1yX76Cyclin-dependent kinase 22.7.11.220.539
3sqq99ZCyclin-dependent kinase 22.7.11.220.538
1gih1PUCyclin-dependent kinase 22.7.11.220.535
4fkw62KCyclin-dependent kinase 22.7.11.220.535
2fvdLIACyclin-dependent kinase 22.7.11.220.533
3qxpX64Cyclin-dependent kinase 22.7.11.220.533
4fko20KCyclin-dependent kinase 22.7.11.220.532
2btsU32Cyclin-dependent kinase 22.7.11.220.531
1urwI1PCyclin-dependent kinase 22.7.11.220.530
3r71X86Cyclin-dependent kinase 22.7.11.220.529
1ke5LS1Cyclin-dependent kinase 22.7.11.220.526
3ral04ZCyclin-dependent kinase 22.7.11.220.526
2vtjLZ4Cyclin-dependent kinase 22.7.11.220.525
3rkb12ZCyclin-dependent kinase 22.7.11.220.524
3unk0BYCyclin-dependent kinase 22.7.11.220.524
1g5sI17Cyclin-dependent kinase 22.7.11.220.523
2r3p3SCCyclin-dependent kinase 22.7.11.220.523
3fz1B98Cyclin-dependent kinase 22.7.11.220.523
3r7yZ04Cyclin-dependent kinase 22.7.11.220.523
4fkt48KCyclin-dependent kinase 22.7.11.220.522
1oiyN41Cyclin-dependent kinase 22.7.11.220.521
1ckpPVBCyclin-dependent kinase 22.7.11.220.519
3sw719KCyclin-dependent kinase 22.7.11.220.519
2vtiLZ3Cyclin-dependent kinase 22.7.11.220.518
4fkr45KCyclin-dependent kinase 22.7.11.220.518
1ke6LS2Cyclin-dependent kinase 22.7.11.220.517
1pxlCK4Cyclin-dependent kinase 22.7.11.220.516
1ykr628Cyclin-dependent kinase 22.7.11.220.515
3qruX19Cyclin-dependent kinase 22.7.11.220.514
4fkq42KCyclin-dependent kinase 22.7.11.220.514
1ke9LS5Cyclin-dependent kinase 22.7.11.220.513
2vtnLZ7Cyclin-dependent kinase 22.7.11.220.513
3ezvEZVCyclin-dependent kinase 22.7.11.220.513
3r73X87Cyclin-dependent kinase 22.7.11.220.513
3r9oZ71Cyclin-dependent kinase 22.7.11.220.513
4bgh3I6Cyclin-dependent kinase 22.7.11.220.512
1oguST8Cyclin-dependent kinase 22.7.11.220.510
2uzoC62Cyclin-dependent kinase 22.7.11.220.510
1p2a5BNCyclin-dependent kinase 22.7.11.220.509
3r8lZ30Cyclin-dependent kinase 22.7.11.220.508
3rpo24ZCyclin-dependent kinase 22.7.11.220.508
1fvt106Cyclin-dependent kinase 22.7.11.220.507
1ke7LS3Cyclin-dependent kinase 22.7.11.220.507
2vtpLZ9Cyclin-dependent kinase 22.7.11.220.507
3qxoX65Cyclin-dependent kinase 22.7.11.220.507
1di8DTQCyclin-dependent kinase 22.7.11.220.506
3qzhX69Cyclin-dependent kinase 22.7.11.220.506
3rk507ZCyclin-dependent kinase 22.7.11.220.506
4fkpLS5Cyclin-dependent kinase 22.7.11.220.506
1h1s4SPCyclin-dependent kinase 22.7.11.220.503
1pxoCK7Cyclin-dependent kinase 22.7.11.220.503
2iw84SPCyclin-dependent kinase 22.7.11.220.499
1v1k3FPCyclin-dependent kinase 22.7.11.220.498
2w06FRVCyclin-dependent kinase 22.7.11.220.498
3unj0BXCyclin-dependent kinase 22.7.11.220.498
3ezrEZRCyclin-dependent kinase 22.7.11.220.497
2vv9IM9Cyclin-dependent kinase 22.7.11.220.496
2a0cCK9Cyclin-dependent kinase 22.7.11.220.495
2uznC96Cyclin-dependent kinase 22.7.11.220.495
1oitHDTCyclin-dependent kinase 22.7.11.220.494
3pj8404Cyclin-dependent kinase 22.7.11.220.494
4ek610KCyclin-dependent kinase 22.7.11.220.494
3roy22ZCyclin-dependent kinase 22.7.11.220.493
3r7eX88Cyclin-dependent kinase 22.7.11.220.492
1fvv107Cyclin-dependent kinase 22.7.11.220.490
2vttLZDCyclin-dependent kinase 22.7.11.220.490
3r7uX96Cyclin-dependent kinase 22.7.11.220.490
3ti1B49Cyclin-dependent kinase 22.7.11.220.490
1h1r6CPCyclin-dependent kinase 22.7.11.220.489
3uli1N3Cyclin-dependent kinase 22.7.11.220.489
2w1hL0FCyclin-dependent kinase 22.7.11.220.488
4fki09KCyclin-dependent kinase 22.7.11.220.488
2r3kSCQCyclin-dependent kinase 22.7.11.220.487
4fkj11KCyclin-dependent kinase 22.7.11.220.487
1pxkCK3Cyclin-dependent kinase 22.7.11.220.486
3ig7EFPCyclin-dependent kinase 22.7.11.220.486
3r6xX84Cyclin-dependent kinase 22.7.11.220.485
1w0xOLOCyclin-dependent kinase 22.7.11.220.484
2vtoLZ8Cyclin-dependent kinase 22.7.11.220.484
2w17I19Cyclin-dependent kinase 22.7.11.220.483
3s1h56ZCyclin-dependent kinase 22.7.11.220.483
2duv371Cyclin-dependent kinase 22.7.11.220.482
2r64740Cyclin-dependent kinase 22.7.11.220.480
3qqfX07Cyclin-dependent kinase 22.7.11.220.480
3qqkX02Cyclin-dependent kinase 22.7.11.220.480
4eor4SPCyclin-dependent kinase 22.7.11.220.480
1ke8LS4Cyclin-dependent kinase 22.7.11.220.479
2iw94SPCyclin-dependent kinase 22.7.11.220.478
3pxyJWSCyclin-dependent kinase 22.7.11.220.478
2r3mSCXCyclin-dependent kinase 22.7.11.220.477
3ddpRC8Cyclin-dependent kinase 22.7.11.220.477
3r8pZ46Cyclin-dependent kinase 22.7.11.220.477
4lyn1YGCyclin-dependent kinase 22.7.11.220.477
3s00Z60Cyclin-dependent kinase 22.7.11.220.476
3rm719ZCyclin-dependent kinase 22.7.11.220.475
4fkg4CKCyclin-dependent kinase 22.7.11.220.475
2r3iSCFCyclin-dependent kinase 22.7.11.220.474
3ddqRRCCyclin-dependent kinase 22.7.11.220.474
1oi9N20Cyclin-dependent kinase 22.7.11.220.473
1oiuN76Cyclin-dependent kinase 22.7.11.220.472
3lfqA28Cyclin-dependent kinase 22.7.11.220.472
4fx360KCyclin-dependent kinase 22.7.11.220.470
3qqlX03Cyclin-dependent kinase 22.7.11.220.469
3r1qX75Cyclin-dependent kinase 22.7.11.220.469
1gii1PUCyclin-dependent kinase 22.7.11.220.468
4kd11QKCyclin-dependent kinase 22.7.11.220.468
2b55D31Cyclin-dependent kinase 22.7.11.220.467
3qqhX0ACyclin-dependent kinase 22.7.11.220.467
3qrtX14Cyclin-dependent kinase 22.7.11.220.467
3s2pPMUCyclin-dependent kinase 22.7.11.220.467
4eos1ROCyclin-dependent kinase 22.7.11.220.467
1dm2HMDCyclin-dependent kinase 22.7.11.220.466
1pyePM1Cyclin-dependent kinase 22.7.11.220.466
2r3jSCJCyclin-dependent kinase 22.7.11.220.466
1h1pCMGCyclin-dependent kinase 22.7.11.220.465
3s0o50ZCyclin-dependent kinase 22.7.11.220.465
1vyw292Cyclin-dependent kinase 22.7.11.220.464
3qtqX35Cyclin-dependent kinase 22.7.11.220.464
1r78FMDCyclin-dependent kinase 22.7.11.220.463
3raiX85Cyclin-dependent kinase 22.7.11.220.463
1pkdUCNCyclin-dependent kinase 22.7.11.220.461
1h0vUN4Cyclin-dependent kinase 22.7.11.220.459
1oiqHDUCyclin-dependent kinase 22.7.11.220.458
2c6tDT5Cyclin-dependent kinase 22.7.11.220.458
2vthLZ2Cyclin-dependent kinase 22.7.11.220.458
3qx2X63Cyclin-dependent kinase 22.7.11.220.458
3r28XA0Cyclin-dependent kinase 22.7.11.220.457
2c6kDT2Cyclin-dependent kinase 22.7.11.220.455
3rzb02ZCyclin-dependent kinase 22.7.11.220.455
1e9hINRCyclin-dependent kinase 22.7.11.220.454
4bcpT3CCyclin-dependent kinase 22.7.11.220.454
2vtsLZCCyclin-dependent kinase 22.7.11.220.453
3qzfX66Cyclin-dependent kinase 22.7.11.220.453
3r83Z14Cyclin-dependent kinase 22.7.11.220.453
3r8vZ62Cyclin-dependent kinase 22.7.11.220.453
3rpy27ZCyclin-dependent kinase 22.7.11.220.453
4nj32KDCyclin-dependent kinase 22.7.11.220.453
3qziX72Cyclin-dependent kinase 22.7.11.220.451
1gij2PUCyclin-dependent kinase 22.7.11.220.449
4qmpDKISerine/threonine-protein kinase 242.7.11.10.449
1w8cN69Cyclin-dependent kinase 22.7.11.220.448
2bhhRYUCyclin-dependent kinase 22.7.11.220.447
2r3r6SCCyclin-dependent kinase 22.7.11.220.447
1oirHDYCyclin-dependent kinase 22.7.11.220.446
2exmZIPCyclin-dependent kinase 22.7.11.220.445
2xnbY8LCyclin-dependent kinase 22.7.11.220.445
3dogNNNCyclin-dependent kinase 22.7.11.220.445
3qwkX62Cyclin-dependent kinase 22.7.11.220.445
1vyzN5BCyclin-dependent kinase 22.7.11.220.444
3rahO1ZCyclin-dependent kinase 22.7.11.220.444
2a4lRRCCyclin-dependent kinase 22.7.11.220.443
2x1nX1NCyclin-dependent kinase 22.7.11.220.443
2uzlC94Cyclin-dependent kinase 22.7.11.220.442
2vtrLZBCyclin-dependent kinase 22.7.11.220.442
3ql8X01Cyclin-dependent kinase 22.7.11.220.442
1b39ATPCyclin-dependent kinase 22.7.11.220.441
3r8zZ63Cyclin-dependent kinase 22.7.11.220.441
4dgnLU2Casein kinase II subunit alpha2.7.11.10.440
4eol1ROCyclin-dependent kinase 22.7.11.220.440
5aniES4Cyclin-dependent kinase 22.7.11.220.440