1.850 Å
X-ray
2011-02-28
Name: | Cyclin-dependent kinase 2 |
---|---|
ID: | CDK2_HUMAN |
AC: | P24941 |
Organism: | Homo sapiens |
Reign: | Eukaryota |
TaxID: | 9606 |
EC Number: | 2.7.11.22 |
Chain Name: | Percentage of Residues within binding site |
---|---|
A | 100 % |
B-Factor: | 28.959 |
---|---|
Number of residues: | 32 |
Including | |
Standard Amino Acids: | 32 |
Non Standard Amino Acids: | 0 |
Water Molecules: | 0 |
Cofactors: | |
Metals: |
Ligandability | Volume (Å3) |
---|---|
0.890 | 509.625 |
% Hydrophobic | % Polar |
---|---|
47.68 | 52.32 |
According to VolSite |
HET Code: | X62 |
---|---|
Formula: | C12H9Cl2N5O3 |
Molecular weight: | 342.138 g/mol |
DrugBank ID: | - |
Buried Surface Area: | 56.66 % |
Polar Surface area: | 126.71 Å2 |
Number of | |
---|---|
H-Bond Acceptors: | 6 |
H-Bond Donors: | 2 |
Rings: | 2 |
Aromatic rings: | 2 |
Anionic atoms: | 1 |
Cationic atoms: | 1 |
Rule of Five Violation: | 0 |
Rotatable Bonds: | 5 |
X | Y | Z |
---|---|---|
-65.5777 | 25.291 | -83.0401 |
Represent the protein/ligand binding mode, centered on the ligand
Dashed lines represents hydrogen bonds and metal interactions
Green residue labels for amino acids with hydrophobic contacts (green lines) to the ligand
Ligand | Protein | Interaction | |||
---|---|---|---|---|---|
Atom | Atom | Residue | Distance (Å) | Angle (°) | Type |
C14 | CG2 | ILE- 10 | 3.83 | 0 | Hydrophobic |
C09 | CG2 | ILE- 10 | 3.51 | 0 | Hydrophobic |
C06 | CG1 | VAL- 18 | 4.23 | 0 | Hydrophobic |
C10 | CG1 | VAL- 18 | 3.98 | 0 | Hydrophobic |
CL21 | CG2 | VAL- 18 | 4.03 | 0 | Hydrophobic |
C06 | CB | ALA- 31 | 3.54 | 0 | Hydrophobic |
O20 | NZ | LYS- 33 | 3.37 | 142.53 | H-Bond (Protein Donor) |
O20 | NZ | LYS- 33 | 3.37 | 0 | Ionic (Protein Cationic) |
N02 | O | GLU- 81 | 2.95 | 161.87 | H-Bond (Ligand Donor) |
N01 | O | LEU- 83 | 2.99 | 128.47 | H-Bond (Ligand Donor) |
O18 | N | LEU- 83 | 2.99 | 165.98 | H-Bond (Protein Donor) |
C13 | CD2 | LEU- 134 | 3.82 | 0 | Hydrophobic |
C07 | CD1 | LEU- 134 | 3.68 | 0 | Hydrophobic |