1.950 Å
X-ray
2011-03-06
Name: | Cyclin-dependent kinase 2 |
---|---|
ID: | CDK2_HUMAN |
AC: | P24941 |
Organism: | Homo sapiens |
Reign: | Eukaryota |
TaxID: | 9606 |
EC Number: | 2.7.11.22 |
Chain Name: | Percentage of Residues within binding site |
---|---|
A | 100 % |
B-Factor: | 29.413 |
---|---|
Number of residues: | 31 |
Including | |
Standard Amino Acids: | 30 |
Non Standard Amino Acids: | 0 |
Water Molecules: | 1 |
Cofactors: | |
Metals: |
Ligandability | Volume (Å3) |
---|---|
0.861 | 597.375 |
% Hydrophobic | % Polar |
---|---|
38.98 | 61.02 |
According to VolSite |
HET Code: | X69 |
---|---|
Formula: | C14H14N4O4 |
Molecular weight: | 302.285 g/mol |
DrugBank ID: | - |
Buried Surface Area: | 57.14 % |
Polar Surface area: | 123.05 Å2 |
Number of | |
---|---|
H-Bond Acceptors: | 6 |
H-Bond Donors: | 2 |
Rings: | 2 |
Aromatic rings: | 2 |
Anionic atoms: | 1 |
Cationic atoms: | 1 |
Rule of Five Violation: | 0 |
Rotatable Bonds: | 6 |
X | Y | Z |
---|---|---|
-38.9781 | -46.0534 | 25.1615 |
Represent the protein/ligand binding mode, centered on the ligand
Dashed lines represents hydrogen bonds and metal interactions
Green residue labels for amino acids with hydrophobic contacts (green lines) to the ligand
Ligand | Protein | Interaction | |||
---|---|---|---|---|---|
Atom | Atom | Residue | Distance (Å) | Angle (°) | Type |
C18 | CG2 | ILE- 10 | 3.48 | 0 | Hydrophobic |
C08 | CG2 | ILE- 10 | 3.49 | 0 | Hydrophobic |
C17 | CG2 | ILE- 10 | 3.57 | 0 | Hydrophobic |
C05 | CG1 | VAL- 18 | 4.14 | 0 | Hydrophobic |
C09 | CG1 | VAL- 18 | 3.96 | 0 | Hydrophobic |
C18 | CB | VAL- 18 | 3.64 | 0 | Hydrophobic |
C05 | CB | ALA- 31 | 3.6 | 0 | Hydrophobic |
O20 | NZ | LYS- 33 | 3.8 | 0 | Ionic (Protein Cationic) |
N02 | O | GLU- 81 | 2.8 | 161.24 | H-Bond (Ligand Donor) |
N01 | O | LEU- 83 | 3.05 | 132.56 | H-Bond (Ligand Donor) |
O19 | N | LEU- 83 | 2.91 | 170.03 | H-Bond (Protein Donor) |
C08 | CD2 | LEU- 134 | 4.47 | 0 | Hydrophobic |
C12 | CD2 | LEU- 134 | 3.71 | 0 | Hydrophobic |
C06 | CD1 | LEU- 134 | 3.62 | 0 | Hydrophobic |