1.900 Å
X-ray
2015-09-07
| Name: | Cyclin-dependent kinase 2 |
|---|---|
| ID: | CDK2_HUMAN |
| AC: | P24941 |
| Organism: | Homo sapiens |
| Reign: | Eukaryota |
| TaxID: | 9606 |
| EC Number: | 2.7.11.22 |
| Chain Name: | Percentage of Residues within binding site |
|---|---|
| A | 100 % |
| B-Factor: | 35.137 |
|---|---|
| Number of residues: | 16 |
| Including | |
| Standard Amino Acids: | 16 |
| Non Standard Amino Acids: | 0 |
| Water Molecules: | 0 |
| Cofactors: | |
| Metals: | |
| Ligandability | Volume (Å3) |
|---|---|
| 0.302 | 553.500 |
| % Hydrophobic | % Polar |
|---|---|
| 42.68 | 57.32 |
| According to VolSite | |

| HET Code: | ES4 |
|---|---|
| Formula: | C5H3ClN4 |
| Molecular weight: | 154.557 g/mol |
| DrugBank ID: | - |
| Buried Surface Area: | 61.74 % |
| Polar Surface area: | 54.46 Å2 |
| Number of | |
|---|---|
| H-Bond Acceptors: | 3 |
| H-Bond Donors: | 1 |
| Rings: | 2 |
| Aromatic rings: | 2 |
| Anionic atoms: | 0 |
| Cationic atoms: | 0 |
| Rule of Five Violation: | 0 |
| Rotatable Bonds: | 0 |
| X | Y | Z |
|---|---|---|
| 0.416 | -5.3649 | -28.285 |
Image generated by PoseView
Represent the protein/ligand binding mode, centered on the ligand
Dashed lines represents hydrogen bonds and metal interactions
Green residue labels for amino acids with hydrophobic contacts (green lines) to the ligand
| Ligand | Protein | Interaction | |||
|---|---|---|---|---|---|
| Atom | Atom | Residue | Distance (Å) | Angle (°) | Type |
| CL01 | CG2 | ILE- 10 | 4.36 | 0 | Hydrophobic |
| CL01 | CG1 | VAL- 18 | 3.9 | 0 | Hydrophobic |
| N09 | NZ | LYS- 33 | 3.11 | 135.33 | H-Bond (Protein Donor) |
| N07 | O | GLU- 81 | 2.68 | 161.39 | H-Bond (Ligand Donor) |
| N05 | N | LEU- 83 | 3.25 | 170.49 | H-Bond (Protein Donor) |