1.750 Å
X-ray
2011-03-06
| Name: | Cyclin-dependent kinase 2 |
|---|---|
| ID: | CDK2_HUMAN |
| AC: | P24941 |
| Organism: | Homo sapiens |
| Reign: | Eukaryota |
| TaxID: | 9606 |
| EC Number: | 2.7.11.22 |
| Chain Name: | Percentage of Residues within binding site |
|---|---|
| A | 100 % |
| B-Factor: | 26.880 |
|---|---|
| Number of residues: | 29 |
| Including | |
| Standard Amino Acids: | 28 |
| Non Standard Amino Acids: | 0 |
| Water Molecules: | 1 |
| Cofactors: | |
| Metals: | |
| Ligandability | Volume (Å3) |
|---|---|
| 0.677 | 506.250 |
| % Hydrophobic | % Polar |
|---|---|
| 42.00 | 58.00 |
| According to VolSite | |

| HET Code: | X72 |
|---|---|
| Formula: | C12H10ClN5O3 |
| Molecular weight: | 307.692 g/mol |
| DrugBank ID: | - |
| Buried Surface Area: | 58.15 % |
| Polar Surface area: | 126.71 Å2 |
| Number of | |
|---|---|
| H-Bond Acceptors: | 6 |
| H-Bond Donors: | 2 |
| Rings: | 2 |
| Aromatic rings: | 2 |
| Anionic atoms: | 1 |
| Cationic atoms: | 1 |
| Rule of Five Violation: | 0 |
| Rotatable Bonds: | 5 |
| X | Y | Z |
|---|---|---|
| -65.938 | -10.2059 | 25.0578 |
Image generated by PoseView
Represent the protein/ligand binding mode, centered on the ligand
Dashed lines represents hydrogen bonds and metal interactions
Green residue labels for amino acids with hydrophobic contacts (green lines) to the ligand
| Ligand | Protein | Interaction | |||
|---|---|---|---|---|---|
| Atom | Atom | Residue | Distance (Å) | Angle (°) | Type |
| C08 | CD1 | ILE- 10 | 4.22 | 0 | Hydrophobic |
| C14 | CG2 | ILE- 10 | 4.18 | 0 | Hydrophobic |
| CL21 | CG2 | ILE- 10 | 3.67 | 0 | Hydrophobic |
| C09 | CG2 | ILE- 10 | 3.54 | 0 | Hydrophobic |
| C06 | CG1 | VAL- 18 | 4.32 | 0 | Hydrophobic |
| C10 | CG1 | VAL- 18 | 4.1 | 0 | Hydrophobic |
| CL21 | CG2 | VAL- 18 | 4.14 | 0 | Hydrophobic |
| C06 | CB | ALA- 31 | 3.56 | 0 | Hydrophobic |
| N02 | O | GLU- 81 | 2.96 | 161.01 | H-Bond (Ligand Donor) |
| N01 | O | LEU- 83 | 2.98 | 130.88 | H-Bond (Ligand Donor) |
| O18 | N | LEU- 83 | 2.98 | 168.39 | H-Bond (Protein Donor) |
| C13 | CD2 | LEU- 134 | 3.87 | 0 | Hydrophobic |
| C07 | CD1 | LEU- 134 | 3.64 | 0 | Hydrophobic |
| N03 | O | HOH- 373 | 3.45 | 123.76 | H-Bond (Protein Donor) |