sc-PDB
An Annotated Database of Druggable Binding Sites from the Protein DataBank
An Annotated Database of Druggable Binding Sites from the Protein DataBank
Cavities are compared using Shaper.
For more information, please see the following publication:
Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
| PDB ID | HET | Uniprot Name | EC Number |
|---|---|---|---|
| 3c11 | GDM | ATP-dependent molecular chaperone HSP82 |
| PDB ID | HET | Uniprot Name | EC Number | Cavity Similarity |
Align |
|---|---|---|---|---|---|
| 3c11 | GDM | ATP-dependent molecular chaperone HSP82 | / | 1.000 | |
| 2iwu | NP5 | ATP-dependent molecular chaperone HSP82 | / | 0.646 | |
| 2vw5 | BC6 | ATP-dependent molecular chaperone HSP82 | / | 0.590 | |
| 2fyp | RDE | Endoplasmin | / | 0.565 | |
| 2iwx | M1S | ATP-dependent molecular chaperone HSP82 | / | 0.559 | |
| 1yc3 | 4BC | Heat shock protein HSP 90-alpha | / | 0.556 | |
| 4asf | 62U | ATP-dependent molecular chaperone HSP82 | / | 0.552 | |
| 2gfd | RDA | Endoplasmin | / | 0.550 | |
| 2xx2 | 13C | ATP-dependent molecular chaperone HSP82 | / | 0.543 | |
| 2xx4 | 13I | ATP-dependent molecular chaperone HSP82 | / | 0.543 | |
| 2yeg | XQG | Heat shock protein HSP 90-alpha | / | 0.540 | |
| 4bqj | XKL | Heat shock protein HSP 90-alpha | / | 0.539 | |
| 2xd6 | XD6 | ATP-dependent molecular chaperone HSP82 | / | 0.538 | |
| 2exl | GDM | Endoplasmin | / | 0.537 | |
| 3hhu | 819 | Heat shock protein HSP 90-alpha | / | 0.537 | |
| 2byi | 2DD | Heat shock protein HSP 90-alpha | / | 0.532 | |
| 4xdm | GDM | Heat shock cognate 90 kDa protein | / | 0.531 | |
| 1u0z | RDC | Endoplasmin | / | 0.528 | |
| 2vwc | BC2 | ATP-dependent molecular chaperone HSP82 | / | 0.528 | |
| 4ce2 | BO5 | ATP-dependent molecular chaperone HSP82 | / | 0.528 | |
| 2wer | RDC | ATP-dependent molecular chaperone HSP82 | / | 0.527 | |
| 2hg1 | N5O | Endoplasmin | / | 0.524 | |
| 3ekr | PY9 | Heat shock protein HSP 90-alpha | / | 0.522 | |
| 4asg | 814 | ATP-dependent molecular chaperone HSP82 | / | 0.522 | |
| 4ce1 | 7FK | ATP-dependent molecular chaperone HSP82 | / | 0.521 | |
| 2wep | ADP | ATP-dependent molecular chaperone HSP82 | / | 0.520 | |
| 3hyz | 42C | Heat shock protein HSP 90-alpha | / | 0.519 | |
| 3t10 | ACP | Heat shock protein HSP 90-alpha | / | 0.518 | |
| 3eko | PYU | Heat shock protein HSP 90-alpha | / | 0.517 | |
| 1uy7 | PU4 | Heat shock protein HSP 90-alpha | / | 0.516 | |
| 2esa | GDM | Endoplasmin | / | 0.516 | |
| 1bgq | RDC | ATP-dependent molecular chaperone HSP82 | / | 0.515 | |
| 3r4p | FU7 | Heat shock protein HSP 90-alpha | / | 0.514 | |
| 4as9 | 4QS | ATP-dependent molecular chaperone HSP82 | / | 0.513 | |
| 2gqp | PA7 | Endoplasmin | / | 0.512 | |
| 2iws | NP4 | ATP-dependent molecular chaperone HSP82 | / | 0.512 | |
| 4ce3 | L4V | ATP-dependent molecular chaperone HSP82 | / | 0.511 | |
| 4fcr | 0TM | Heat shock protein HSP 90-alpha | / | 0.511 | |
| 2brc | CT5 | ATP-dependent molecular chaperone HSP82 | / | 0.510 | |
| 2fxs | RDA | ATP-dependent molecular chaperone HSP82 | / | 0.506 | |
| 2bre | KJ2 | ATP-dependent molecular chaperone HSP82 | / | 0.505 | |
| 2byh | 2D7 | Heat shock protein HSP 90-alpha | / | 0.504 | |
| 2xab | VHD | Heat shock protein HSP 90-alpha | / | 0.504 | |
| 2yee | 2EC | Heat shock protein HSP 90-alpha | / | 0.504 | |
| 1am1 | ADP | ATP-dependent molecular chaperone HSP82 | / | 0.503 | |
| 2bz5 | AB4 | Heat shock protein HSP 90-alpha | / | 0.503 | |
| 3k99 | PFT | Heat shock protein HSP 90-alpha | / | 0.503 | |
| 1ysz | NEC | Endoplasmin | / | 0.501 | |
| 3k97 | 4CD | Heat shock protein HSP 90-alpha | / | 0.499 | |
| 1uy8 | PU5 | Heat shock protein HSP 90-alpha | / | 0.498 | |
| 2bt0 | CT5 | Heat shock protein HSP 90-alpha | / | 0.498 | |
| 2xk2 | ADP | Heat shock protein HSP 90-alpha | / | 0.498 | |
| 3q5l | KX2 | Heat shock protein 83-1 | / | 0.498 | |
| 3r4n | FU5 | Heat shock protein HSP 90-alpha | / | 0.498 | |
| 4jql | VJ6 | Heat shock protein HSP 90-alpha | / | 0.498 | |
| 2yef | ANP | Heat shock protein HSP 90-alpha | / | 0.496 | |
| 1byq | ADP | Heat shock protein HSP 90-alpha | / | 0.495 | |
| 4xcj | ADP | Heat shock cognate 90 kDa protein | / | 0.495 | |
| 2xhr | C0P | Heat shock protein HSP 90-alpha | / | 0.494 | |
| 3hz1 | 42C | Heat shock protein HSP 90-alpha | / | 0.488 | |
| 3t1k | ANP | Heat shock protein HSP 90-alpha | / | 0.488 | |
| 1amw | ADP | ATP-dependent molecular chaperone HSP82 | / | 0.487 | |
| 1uye | PU9 | Heat shock protein HSP 90-alpha | / | 0.484 | |
| 1xl2 | 189 | Gag-Pol polyprotein | 3.4.23.16 | 0.483 | |
| 3rlr | 3RR | Heat shock protein HSP 90-alpha | / | 0.483 | |
| 4eft | EFT | Heat shock protein HSP 90-alpha | / | 0.483 | |
| 4xc0 | ACP | Heat shock cognate 90 kDa protein | / | 0.483 | |
| 1qy5 | NEC | Endoplasmin | / | 0.482 | |
| 4gqt | ADP | Heat shock protein 90 | / | 0.482 | |
| 1y4s | ADP | Chaperone protein HtpG | / | 0.478 | |
| 2bu8 | ADP | [Pyruvate dehydrogenase (acetyl-transferring)] kinase isozyme 2, mitochondrial | 2.7.11.2 | 0.478 | |
| 2qfo | A13 | Heat shock protein HSP 90-alpha | / | 0.478 | |
| 3hz1 | 37D | Heat shock protein HSP 90-alpha | / | 0.478 | |
| 3crl | ANP | [Pyruvate dehydrogenase (acetyl-transferring)] kinase isozyme 2, mitochondrial | 2.7.11.2 | 0.477 | |
| 2yi5 | YI5 | Heat shock protein HSP 90-alpha | / | 0.476 | |
| 3hz5 | Z64 | Heat shock protein HSP 90-alpha | / | 0.476 | |
| 1u0y | PA7 | Endoplasmin | / | 0.473 | |
| 3rlq | 3RQ | Heat shock protein HSP 90-alpha | / | 0.473 | |
| 3r4o | FU3 | Heat shock protein HSP 90-alpha | / | 0.472 | |
| 4b7p | 9UN | Heat shock protein HSP 90-alpha | / | 0.472 | |
| 4efu | EFU | Heat shock protein HSP 90-alpha | / | 0.471 | |
| 2wi6 | ZZ6 | Heat shock protein HSP 90-alpha | / | 0.470 | |
| 1u2o | NEC | Endoplasmin | / | 0.469 | |
| 1qy8 | RDI | Endoplasmin | / | 0.467 | |
| 3wha | WHA | Heat shock protein HSP 90-alpha | / | 0.467 | |
| 2xht | C0Y | Heat shock protein HSP 90-alpha | / | 0.466 | |
| 3o0i | P54 | Heat shock protein HSP 90-alpha | / | 0.466 | |
| 3t2s | AGS | Heat shock protein HSP 90-alpha | / | 0.465 | |
| 1uyd | PU8 | Heat shock protein HSP 90-alpha | / | 0.464 | |
| 4egi | B2J | Heat shock protein HSP 90-alpha | / | 0.464 | |
| 2cgf | P2N | ATP-dependent molecular chaperone HSP82 | / | 0.463 | |
| 2hch | N5A | Endoplasmin | / | 0.463 | |
| 1yc1 | 4BC | Heat shock protein HSP 90-alpha | / | 0.462 | |
| 1uy9 | PU6 | Heat shock protein HSP 90-alpha | / | 0.461 | |
| 2yjx | YJX | Heat shock protein HSP 90-alpha | / | 0.461 | |
| 5f5r | ANP | Heat shock protein 75 kDa, mitochondrial | / | 0.461 | |
| 3ied | AN2 | HSP90 | / | 0.460 | |
| 4ipe | ANP | TNF receptor-associated protein 1 | / | 0.460 | |
| 2zdy | ADP | [Pyruvate dehydrogenase (acetyl-transferring)] kinase isozyme 4, mitochondrial | 2.7.11.2 | 0.459 | |
| 2ykj | YKJ | Heat shock protein HSP 90-alpha | / | 0.458 | |
| 3pej | BC2 | Endoplasmin homolog, putative | / | 0.458 | |
| 2qfo | A51 | Heat shock protein HSP 90-alpha | / | 0.457 | |
| 3k98 | 1RC | Heat shock protein HSP 90-alpha | / | 0.457 | |
| 2qg2 | A91 | Heat shock protein HSP 90-alpha | / | 0.455 | |
| 3peh | IBD | Endoplasmin homolog, putative | / | 0.455 | |
| 1qbg | FAD | NAD(P)H dehydrogenase [quinone] 1 | 1.6.5.2 | 0.453 | |
| 2xcm | ADP | Cytosolic heat shock protein 90 | / | 0.453 | |
| 2fwz | H71 | Heat shock protein HSP 90-alpha | / | 0.450 | |
| 2wi7 | 2KL | Heat shock protein HSP 90-alpha | / | 0.450 | |
| 3d0b | SNX | Heat shock protein HSP 90-alpha | / | 0.450 | |
| 1uyi | PUZ | Heat shock protein HSP 90-alpha | / | 0.449 | |
| 2fwy | H64 | Heat shock protein HSP 90-alpha | / | 0.449 | |
| 1uyf | PU1 | Heat shock protein HSP 90-alpha | / | 0.448 | |
| 2znq | 401 | Peroxisome proliferator-activated receptor delta | / | 0.448 | |
| 3o6o | 94M | Heat shock protein 83 | / | 0.448 | |
| 1nhh | ANP | DNA mismatch repair protein MutL | / | 0.447 | |
| 1uyk | PUX | Heat shock protein HSP 90-alpha | / | 0.446 | |
| 3b28 | B2X | Heat shock protein HSP 90-alpha | / | 0.444 | |
| 3qp0 | NI8 | Gag-Pol polyprotein | 3.4.23.16 | 0.444 | |
| 4xcl | AGS | Heat shock cognate 90 kDa protein | / | 0.444 | |
| 1lf3 | EH5 | Plasmepsin-2 | 3.4.23.39 | 0.443 | |
| 1yt0 | ADP | Endoplasmin | / | 0.443 | |
| 3ruk | AER | Steroid 17-alpha-hydroxylase/17,20 lyase | / | 0.443 | |
| 3wv9 | FEG | Hmd co-occurring protein HcgE | / | 0.442 | |
| 4gk4 | L90 | Ephrin type-A receptor 3 | 2.7.10.1 | 0.442 | |
| 2pwc | G3G | Gag-Pol polyprotein | 3.4.23.16 | 0.441 | |
| 1fwk | ADP | Homoserine kinase | 2.7.1.39 | 0.440 | |
| 1h69 | FAD | NAD(P)H dehydrogenase [quinone] 1 | 1.6.5.2 | 0.440 | |
| 1i59 | ANP | Chemotaxis protein CheA | 2.7.13.3 | 0.440 | |
| 1y0s | 331 | Peroxisome proliferator-activated receptor delta | / | 0.440 | |
| 2fdd | 385 | Pol protein | / | 0.440 | |
| 4egh | 0OY | Heat shock protein HSP 90-alpha | / | 0.440 |