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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Binding site similarity measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Binding Sites are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
Binding Sites are considered as similar when the similarity value is greater than 0.44

Reference Protein Data Bank Entry :
PDB IDHETUniprot NameEC Number
2fvdLIACyclin-dependent kinase 22.7.11.22

Complex with similar binding sites

PDB ID HET Uniprot Name EC Number Binding Site
Similarity		 Align
2fvdLIACyclin-dependent kinase 22.7.11.221.000
2vu3LZECyclin-dependent kinase 22.7.11.220.616
3qxpX64Cyclin-dependent kinase 22.7.11.220.581
2w05FRTCyclin-dependent kinase 22.7.11.220.564
3rak03ZCyclin-dependent kinase 22.7.11.220.546
3s1h56ZCyclin-dependent kinase 22.7.11.220.542
3qruX19Cyclin-dependent kinase 22.7.11.220.541
3rpv26ZCyclin-dependent kinase 22.7.11.220.541
3rm618ZCyclin-dependent kinase 22.7.11.220.538
3qtuX44Cyclin-dependent kinase 22.7.11.220.536
3r9dX6BCyclin-dependent kinase 22.7.11.220.535
3r7yZ04Cyclin-dependent kinase 22.7.11.220.534
2c6iDT1Cyclin-dependent kinase 22.7.11.220.528
2w06FRVCyclin-dependent kinase 22.7.11.220.525
4bcmT7ZCyclin-dependent kinase 22.7.11.220.524
3qxoX65Cyclin-dependent kinase 22.7.11.220.523
3qtrX36Cyclin-dependent kinase 22.7.11.220.519
3rkb12ZCyclin-dependent kinase 22.7.11.220.519
2vv9IM9Cyclin-dependent kinase 22.7.11.220.517
3qrtX14Cyclin-dependent kinase 22.7.11.220.515
3ezrEZRCyclin-dependent kinase 22.7.11.220.512
1pxmCK5Cyclin-dependent kinase 22.7.11.220.508
3qtxX43Cyclin-dependent kinase 22.7.11.220.508
3ral04ZCyclin-dependent kinase 22.7.11.220.508
3rm719ZCyclin-dependent kinase 22.7.11.220.508
3rni21ZCyclin-dependent kinase 22.7.11.220.508
3r1sX73Cyclin-dependent kinase 22.7.11.220.507
1ykr628Cyclin-dependent kinase 22.7.11.220.505
3pj8404Cyclin-dependent kinase 22.7.11.220.505
2vttLZDCyclin-dependent kinase 22.7.11.220.504
3sqq99ZCyclin-dependent kinase 22.7.11.220.501
3sw418KCyclin-dependent kinase 22.7.11.220.499
1ke5LS1Cyclin-dependent kinase 22.7.11.220.496
3rk909ZCyclin-dependent kinase 22.7.11.220.496
1oiyN41Cyclin-dependent kinase 22.7.11.220.495
2b52D42Cyclin-dependent kinase 22.7.11.220.495
3r1yX76Cyclin-dependent kinase 22.7.11.220.495
3r7uX96Cyclin-dependent kinase 22.7.11.220.494
3lfsA07Cyclin-dependent kinase 22.7.11.220.493
1v1k3FPCyclin-dependent kinase 22.7.11.220.492
3qwjX6ACyclin-dependent kinase 22.7.11.220.492
1ke6LS2Cyclin-dependent kinase 22.7.11.220.491
3qtzX42Cyclin-dependent kinase 22.7.11.220.491
1urwI1PCyclin-dependent kinase 22.7.11.220.489
1fvt106Cyclin-dependent kinase 22.7.11.220.488
4acm7YGCyclin-dependent kinase 22.7.11.220.487
4erwSTUCyclin-dependent kinase 22.7.11.220.487
2r3p3SCCyclin-dependent kinase 22.7.11.220.485
3r9hZ67Cyclin-dependent kinase 22.7.11.220.485
3lfnA27Cyclin-dependent kinase 22.7.11.220.484
3qzhX69Cyclin-dependent kinase 22.7.11.220.484
3r7iX9ICyclin-dependent kinase 22.7.11.220.484
3sw719KCyclin-dependent kinase 22.7.11.220.483
3r28XA0Cyclin-dependent kinase 22.7.11.220.482
2btsU32Cyclin-dependent kinase 22.7.11.220.481
3rjc06ZCyclin-dependent kinase 22.7.11.220.481
4bgh3I6Cyclin-dependent kinase 22.7.11.220.481
4fx360KCyclin-dependent kinase 22.7.11.220.481
3r73X87Cyclin-dependent kinase 22.7.11.220.480
2r3mSCXCyclin-dependent kinase 22.7.11.220.478
3r8pZ46Cyclin-dependent kinase 22.7.11.220.478
1p2a5BNCyclin-dependent kinase 22.7.11.220.477
2vtpLZ9Cyclin-dependent kinase 22.7.11.220.477
3qx2X63Cyclin-dependent kinase 22.7.11.220.477
1g5sI17Cyclin-dependent kinase 22.7.11.220.476
2a0cCK9Cyclin-dependent kinase 22.7.11.220.476
3my5RFZCyclin-dependent kinase 22.7.11.220.476
3r71X86Cyclin-dependent kinase 22.7.11.220.476
3r7vZ02Cyclin-dependent kinase 22.7.11.220.476
3roy22ZCyclin-dependent kinase 22.7.11.220.476
3u4uLNHCasein kinase II subunit alpha2.7.11.10.476
4eor4SPCyclin-dependent kinase 22.7.11.220.476
3rpo24ZCyclin-dependent kinase 22.7.11.220.475
1h1r6CPCyclin-dependent kinase 22.7.11.220.474
1w8cN69Cyclin-dependent kinase 22.7.11.220.474
3qu0X40Cyclin-dependent kinase 22.7.11.220.474
3ezvEZVCyclin-dependent kinase 22.7.11.220.473
3r6xX84Cyclin-dependent kinase 22.7.11.220.473
4fkr45KCyclin-dependent kinase 22.7.11.220.473
3rmf20ZCyclin-dependent kinase 22.7.11.220.471
1e9hINRCyclin-dependent kinase 22.7.11.220.470
1pkdUCNCyclin-dependent kinase 22.7.11.220.470
4fkv61KCyclin-dependent kinase 22.7.11.220.470
2vtqLZACyclin-dependent kinase 22.7.11.220.469
3ambVX6cAMP-dependent protein kinase catalytic subunit alpha2.7.11.110.469
3r8lZ30Cyclin-dependent kinase 22.7.11.220.469
3raiX85Cyclin-dependent kinase 22.7.11.220.469
4mq12C3Dual specificity tyrosine-phosphorylation-regulated kinase 1A2.7.12.10.468
1oiqHDUCyclin-dependent kinase 22.7.11.220.467
3unk0BYCyclin-dependent kinase 22.7.11.220.467
4bcqTJFCyclin-dependent kinase 22.7.11.220.466
3ddqRRCCyclin-dependent kinase 22.7.11.220.465
3s2pPMUCyclin-dependent kinase 22.7.11.220.465
4fkw62KCyclin-dependent kinase 22.7.11.220.465
1fvv107Cyclin-dependent kinase 22.7.11.220.464
2btrU73Cyclin-dependent kinase 22.7.11.220.464
4ez50RSCyclin-dependent kinase 62.7.11.220.464
4fko20KCyclin-dependent kinase 22.7.11.220.464
1vyw292Cyclin-dependent kinase 22.7.11.220.463
2r3gSC9Cyclin-dependent kinase 22.7.11.220.463
4lyn1YGCyclin-dependent kinase 22.7.11.220.463
1di8DTQCyclin-dependent kinase 22.7.11.220.462
1gih1PUCyclin-dependent kinase 22.7.11.220.462
1y91CT9Cyclin-dependent kinase 22.7.11.220.462
2c6o4SPCyclin-dependent kinase 22.7.11.220.462
2uznC96Cyclin-dependent kinase 22.7.11.220.462
1w0xOLOCyclin-dependent kinase 22.7.11.220.461
2i40BLZCyclin-dependent kinase 22.7.11.220.461
2r3o2SCCyclin-dependent kinase 22.7.11.220.461
3r9nZ68Cyclin-dependent kinase 22.7.11.220.461
4ek610KCyclin-dependent kinase 22.7.11.220.461
4nj32KDCyclin-dependent kinase 22.7.11.220.461
1ke9LS5Cyclin-dependent kinase 22.7.11.220.460
2vtsLZCCyclin-dependent kinase 22.7.11.220.460
2b55D31Cyclin-dependent kinase 22.7.11.220.459
3qwkX62Cyclin-dependent kinase 22.7.11.220.459
3qzgX67Cyclin-dependent kinase 22.7.11.220.459
2w1hL0FCyclin-dependent kinase 22.7.11.220.458
3qziX72Cyclin-dependent kinase 22.7.11.220.458
3rk708ZCyclin-dependent kinase 22.7.11.220.458
4bcnT9NCyclin-dependent kinase 22.7.11.220.458
4fkq42KCyclin-dependent kinase 22.7.11.220.458
3ddpRC8Cyclin-dependent kinase 22.7.11.220.457
1aq1STUCyclin-dependent kinase 22.7.11.220.456
1oitHDTCyclin-dependent kinase 22.7.11.220.456
3s0o50ZCyclin-dependent kinase 22.7.11.220.456
1oi9N20Cyclin-dependent kinase 22.7.11.220.455
4ii5ADPCyclin-dependent kinase 22.7.11.220.455
2w17I19Cyclin-dependent kinase 22.7.11.220.454
3r1qX75Cyclin-dependent kinase 22.7.11.220.454
1h1s4SPCyclin-dependent kinase 22.7.11.220.453
2cchATPCyclin-dependent kinase 22.7.11.220.453
2vtoLZ8Cyclin-dependent kinase 22.7.11.220.453
3qqkX02Cyclin-dependent kinase 22.7.11.220.453
1ke7LS3Cyclin-dependent kinase 22.7.11.220.452
2r3r6SCCyclin-dependent kinase 22.7.11.220.451
4fki09KCyclin-dependent kinase 22.7.11.220.451
1gii1PUCyclin-dependent kinase 22.7.11.220.450
1ke8LS4Cyclin-dependent kinase 22.7.11.220.450
2bheBRYCyclin-dependent kinase 22.7.11.220.450
3qqfX07Cyclin-dependent kinase 22.7.11.220.450
2c4g514Cyclin-dependent kinase 22.7.11.220.449
2c6mDT5Cyclin-dependent kinase 22.7.11.220.449
3o0g3O0Cyclin-dependent-like kinase 52.7.11.10.449
1h1pCMGCyclin-dependent kinase 22.7.11.220.448
1oguST8Cyclin-dependent kinase 22.7.11.220.448
2r3iSCFCyclin-dependent kinase 22.7.11.220.448
1vyzN5BCyclin-dependent kinase 22.7.11.220.447
3r7eX88Cyclin-dependent kinase 22.7.11.220.447
3r8zZ63Cyclin-dependent kinase 22.7.11.220.447
3rahO1ZCyclin-dependent kinase 22.7.11.220.447
4ez30S0Cyclin-dependent kinase 22.7.11.220.447
4fv9E71Mitogen-activated protein kinase 12.7.11.240.447
1pyePM1Cyclin-dependent kinase 22.7.11.220.446
4bcpT3CCyclin-dependent kinase 22.7.11.220.446
4ivb1J5Tyrosine-protein kinase JAK1/0.446
4q5jANPProtein BRASSINOSTEROID INSENSITIVE 12.7.10.10.446
2c69CT8Cyclin-dependent kinase 22.7.11.220.445
2r64740Cyclin-dependent kinase 22.7.11.220.445
3c0g3AMPeripheral plasma membrane protein CASK2.7.11.10.445
3qqlX03Cyclin-dependent kinase 22.7.11.220.445
3ti1B49Cyclin-dependent kinase 22.7.11.220.445
4fkpLS5Cyclin-dependent kinase 22.7.11.220.445
2r3lSCWCyclin-dependent kinase 22.7.11.220.444
2xmyCDKCyclin-dependent kinase 22.7.11.220.444
3i4bZ48Glycogen synthase kinase-3 beta2.7.11.260.444
4kd11QKCyclin-dependent kinase 22.7.11.220.444
3lfqA28Cyclin-dependent kinase 22.7.11.220.443
3f69XDRSerine/threonine-protein kinase PknB2.7.11.10.442
2iw94SPCyclin-dependent kinase 22.7.11.220.441
3qqhX0ACyclin-dependent kinase 22.7.11.220.441
1pxoCK7Cyclin-dependent kinase 22.7.11.220.440
2uzoC62Cyclin-dependent kinase 22.7.11.220.440
2vtiLZ3Cyclin-dependent kinase 22.7.11.220.440
3iggEFQCyclin-dependent kinase 22.7.11.220.440