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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Binding site similarity measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Binding Sites are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
Binding Sites are considered as similar when the similarity value is greater than 0.44

Reference Protein Data Bank Entry :
PDB IDHETUniprot NameEC Number
2aibERGBeta-elicitin cinnamomin

Complex with similar binding sites

PDB ID HET Uniprot Name EC Number Binding Site
Similarity
Align
2aibERGBeta-elicitin cinnamomin/1.000
1lriCLRBeta-elicitin cryptogein/0.693
2y03Y01Beta-1 adrenergic receptor/0.522
1osvCHCBile acid receptor/0.518
3p6pA6BCamphor 5-monooxygenase1.14.15.10.509
2y00Y01Beta-1 adrenergic receptor/0.505
1d3gBREDihydroorotate dehydrogenase (quinone), mitochondrial1.3.5.20.501
4bb5HD2Corticosteroid 11-beta-dehydrogenase isozyme 11.1.1.1460.498
3p6mDSOCamphor 5-monooxygenase1.14.15.10.495
2y01Y01Beta-1 adrenergic receptor/0.494
3stuDK3Methylketone synthase I/0.492
2e9cB75Ditrans,polycis-undecaprenyl-diphosphate synthase ((2E,6E)-farnesyl-diphosphate specific)2.5.1.310.491
3p6nDSOCamphor 5-monooxygenase1.14.15.10.491
1uuoBRFDihydroorotate dehydrogenase (quinone), mitochondrial1.3.5.20.490
2y02Y01Beta-1 adrenergic receptor/0.490
3icrCOACoenzyme A disulfide reductase/0.490
1ot7CHCBile acid receptor/0.489
2prh238Dihydroorotate dehydrogenase (quinone), mitochondrial1.3.5.20.487
1y5rC0RCorticosteroid 11-beta-dehydrogenase isozyme 11.1.1.1460.486
3f5p741Insulin-like growth factor 1 receptor2.7.10.10.486
3sz0FADSulfide-quinone reductase/0.484
5br4NADLactaldehyde reductase1.1.1.770.484
3ol5SAWCamphor 5-monooxygenase1.14.15.10.482
3l8p0CEAngiopoietin-1 receptor2.7.10.10.481
3vt9YI4Vitamin D3 receptor/0.480
3dxjNE6DNA-directed RNA polymerase subunit beta/0.479
3dxjNE6DNA-directed RNA polymerase subunit beta'/0.479
3w0hW12Vitamin D3 receptor/0.479
4nky3QZSteroid 17-alpha-hydroxylase/17,20 lyase/0.479
3p6oETGCamphor 5-monooxygenase1.14.15.10.478
3dl9V2HVitamin D 25-hydroxylase/0.477
3h0aD30Peroxisome proliferator-activated receptor gamma/0.477
3ictCOACoenzyme A disulfide reductase/0.477
1pn3TYDdTDP-epi-vancosaminyltransferase2.4.1.3110.476
3w33W19Epidermal growth factor receptor2.7.10.10.476
4dggI76Proto-oncogene tyrosine-protein kinase Src2.7.10.20.476
4hfmNAP2-alkenal reductase (NADP(+)-dependent)/0.475
1xu7CPSCorticosteroid 11-beta-dehydrogenase isozyme 11.1.1.1460.474
3b20NADGlyceraldehyde-3-phosphate dehydrogenase/0.474
3mg3ECHOrange carotenoid-binding protein/0.474
3t14FADSulfide-quinone reductase/0.473
4q73FADBifunctional protein PutA/0.473
2c0iL1GTyrosine-protein kinase HCK2.7.10.20.472
2xynVX6Abelson tyrosine-protein kinase 22.7.10.20.472
4g20484Vitamin D3 receptor A/0.472
4mihFADPyranose 2-oxidase1.1.3.100.472
1fm4DXCMajor pollen allergen Bet v 1-L/0.471
1zhwHC2Oxysterol-binding protein homolog 4/0.471
3icsCOACoenzyme A disulfide reductase/0.471
4b7xNAPProbable oxidoreductase/0.471
4jvb1M0Retinal rod rhodopsin-sensitive cGMP 3',5'-cyclic phosphodiesterase subunit delta/0.471
4q71FADBifunctional protein PutA/0.471
3kytHC2Nuclear receptor ROR-gamma/0.470
1yb5NAPQuinone oxidoreductase1.6.5.50.469
3zuyTCHTransporter/0.469
2hcdBIVVitamin D3 receptor A/0.468
2hrcCHDFerrochelatase, mitochondrial4.99.1.10.468
2jd0NDP1-deoxy-D-xylulose 5-phosphate reductoisomerase/0.468
3kpkFADSulfide-quinone reductase/0.468
3qlfPD5Proto-oncogene tyrosine-protein kinase Src2.7.10.20.468
3t2yFADSulfide-quinone reductase/0.468
2zlaVDBVitamin D3 receptor/0.467
3h6k33TCorticosteroid 11-beta-dehydrogenase isozyme 11.1.1.1460.467
3jynNDPQuinone oxidoreductase/0.467
4ubsDIFPentalenic acid synthase1.14.15.110.467
1re9DSOCamphor 5-monooxygenase1.14.15.10.466
2djiFADPyruvate oxidase/0.466
3vs6VSHTyrosine-protein kinase HCK2.7.10.20.466
4nb6444Nuclear receptor ROR-gamma/0.466
2c0tL3GTyrosine-protein kinase HCK2.7.10.20.465
2belCBOCorticosteroid 11-beta-dehydrogenase isozyme 11.1.1.1460.464
4jvf17XRetinal rod rhodopsin-sensitive cGMP 3',5'-cyclic phosphodiesterase subunit delta/0.464
4oze24GUDP-3-O-acyl-N-acetylglucosamine deacetylase/0.464
3cylVITBasic phospholipase A2 homolog piratoxin-2/0.463
3ds6A17Mitogen-activated protein kinase 14/0.463
4dshFDAUncharacterized protein/0.463
4g1z0VPVitamin D3 receptor A/0.463
1fbmRTLCartilage oligomeric matrix protein/0.462
3rukAERSteroid 17-alpha-hydroxylase/17,20 lyase/0.462
3vt5YI2Vitamin D3 receptor/0.462
2hwrDRDPeroxisome proliferator-activated receptor gamma/0.461
3u1y03IUDP-3-O-acyl-N-acetylglucosamine deacetylase/0.461
4jv618FRetinal rod rhodopsin-sensitive cGMP 3',5'-cyclic phosphodiesterase subunit delta/0.461
1zhzERGOxysterol-binding protein homolog 4/0.460
2b0m201Dihydroorotate dehydrogenase (quinone), mitochondrial1.3.5.20.460
3abiNADUncharacterized protein/0.460
3nalDBKCalcium-transporting ATPase/0.460
3tmz06XCytochrome P450 2B41.14.14.10.460
3w5rLOAVitamin D3 receptor/0.460
4mq12C3Dual specificity tyrosine-phosphorylation-regulated kinase 1A2.7.12.10.460
1i7iAZ2Peroxisome proliferator-activated receptor gamma/0.459
3h1jSMACytochrome b/0.459
4ia2BIVVitamin D3 receptor A/0.459
4nkvAERSteroid 17-alpha-hydroxylase/17,20 lyase/0.459
5hes032Mitogen-activated protein kinase kinase kinase 202.7.11.250.459
1n4hREANuclear receptor ROR-beta/0.458
1xddAAYIntegrin alpha-L/0.458
2vnaNAPProstaglandin reductase 21.3.1.480.458
2znoS44Peroxisome proliferator-activated receptor gamma/0.458
3c0g3AMPeripheral plasma membrane protein CASK2.7.11.10.458
3t2kFADSulfide-quinone reductase/0.458
3ua506XCytochrome P450 2B61.14.130.458
3w18N13Aurora kinase A2.7.11.10.458
4c7kNAPCorticosteroid 11-beta-dehydrogenase isozyme 11.1.1.1460.458
4qe6JN3Bile acid receptor/0.458
1iyzNDPProbable quinone oxidoreductase/0.457
2g78REACellular retinoic acid-binding protein 2/0.457
2xc3RT8Steroid C26-monooxygenase1.14.13.1410.457
3utgFDAUDP-galactopyranose mutase/0.457
1hdcCBO3-alpha-(or 20-beta)-hydroxysteroid dehydrogenase1.1.1.530.456
1kzuRG1Light-harvesting protein B-800/850 alpha chain/0.456
1kzuRG1Light-harvesting protein B-800/850 beta chain/0.456
1v5eFADPyruvate oxidase/0.456
2c7xNRBCytochrome P450 monooxygenase PikC/0.456
2fvlNAPAldo-keto reductase family 1 member C41.1.1.2250.456
2j3iNAPNADPH-dependent oxidoreductase 2-alkenal reductase1.3.1.740.456
2oyeIM8Prostaglandin G/H synthase 11.14.99.10.456
2ozuACOHistone acetyltransferase KAT6A/0.456
2qd4CHDFerrochelatase, mitochondrial4.99.1.10.456
4fehFADDecaprenylphosphoryl-beta-D-ribose oxidase/0.456
4id71G0Activated CDC42 kinase 1/0.456
4r20AERCytochrome P450 family 17 polypeptide 2/0.456
4wx1FDAUDP-galactopyranose mutase/0.456
1qcfPP1Tyrosine-protein kinase HCK2.7.10.20.455
2j3kNAPNADPH-dependent oxidoreductase 2-alkenal reductase1.3.1.740.455
2y46MIVMycinamicin IV hydroxylase/epoxidase/0.455
3g1rNAP3-oxo-5-beta-steroid 4-dehydrogenase/0.455
3sgx0FWDitrans,polycis-undecaprenyl-diphosphate synthase ((2E,6E)-farnesyl-diphosphate specific)2.5.1.310.455
4b7dQLECytochrome P450 monooxygenase PikC/0.455
4nka2K7Fibroblast growth factor receptor 1/0.455
1fmjRTLRetinol dehydratase/0.454
1zmcNADDihydrolipoyl dehydrogenase, mitochondrial1.8.1.40.454
2qfxNDPIsocitrate dehydrogenase [NADP], mitochondrial1.1.1.420.454
2qo5CHDFatty acid-binding protein 10-A, liver basic/0.454
3l0lHC3Nuclear receptor ROR-gamma/0.454
3vs2VSBTyrosine-protein kinase HCK2.7.10.20.454
3vt7VDXVitamin D3 receptor/0.454
3w2o03PEpidermal growth factor receptor2.7.10.10.454
5a3bAPRSIR2 family protein/0.454
1lwiNAP3-alpha-hydroxysteroid dehydrogenase1.1.1.500.453
2azyCHDPhospholipase A2, major isoenzyme3.1.1.40.453
4xumIMNPeroxisome proliferator-activated receptor gamma/0.453
1poxFADPyruvate oxidase1.2.3.30.452
1pp9SMACytochrome b/0.452
2zl9VDAVitamin D3 receptor/0.452
3i99FADUDP-N-acetylenolpyruvoylglucosamine reductase/0.452
3w5p4OAVitamin D3 receptor/0.452
3zxtACPDeath-associated protein kinase 12.7.11.10.452
4j6cSTRCytochrome P450 monooxygenase/0.452
4m87NADEnoyl-[acyl-carrier-protein] reductase [NADH]/0.452
4pd6URINucleoside permease/0.452
1t0lNAPIsocitrate dehydrogenase [NADP] cytoplasmic1.1.1.420.451
2nnhREACytochrome P450 2C8/0.451
3ctj320Hepatocyte growth factor receptor2.7.10.10.451
3fcoIIGCorticosteroid 11-beta-dehydrogenase isozyme 11.1.1.1460.451
3vt65YIVitamin D3 receptor/0.451
4otwDB8Receptor tyrosine-protein kinase erbB-32.7.10.10.451
4z64ILE_THR_GLN_TYS_TYSPhytosulfokine receptor 12.7.11.10.451
5ajqDB8Serine/threonine-protein kinase 102.7.11.10.451
5l7dCLRSmoothened homolog/0.451
5k2bZMAAdenosine receptor A2a/0.451
1c1dNAIPhenylalanine dehydrogenase/0.450
1dkfBMSRetinoic acid receptor alpha/0.450
1k6pXN3Gag-Pol polyprotein3.4.23.160.450
1ppjSMACytochrome b/0.450
1qbgFADNAD(P)H dehydrogenase [quinone] 11.6.5.20.450
2wetFADTryptophan 5-halogenase/0.450
2zb3NDPProstaglandin reductase 21.3.1.480.450
3ggpNADPrephenate dehydrogenase/0.450
4aw3MYVMycinamicin IV hydroxylase/epoxidase/0.450
4nieNBHNuclear receptor ROR-gamma/0.450
4ug2NGIAdenosine receptor A2a/0.450
1rrmAPRLactaldehyde reductase1.1.1.770.449
1tw4CHDFatty acid-binding protein, liver/0.449
1xuoLA1Integrin alpha-L/0.449
2azzTCHPhospholipase A2, major isoenzyme3.1.1.40.449
2b00GCHPhospholipase A2, major isoenzyme3.1.1.40.449
3fcjFADNitroalkane oxidase1.7.3.10.449
3gc9B45Mitogen-activated protein kinase 112.7.11.240.449
3ggoNAIPrephenate dehydrogenase/0.449
3gmd2M3Corticosteroid 11-beta-dehydrogenase isozyme 11.1.1.1460.449
3uwlFOZThymidylate synthase/0.449
3vrzVRZTyrosine-protein kinase HCK2.7.10.20.449
4aotGW8Serine/threonine-protein kinase 102.7.11.10.449
4g310WHEukaryotic translation initiation factor 2-alpha kinase 32.7.11.10.449
4g34924Eukaryotic translation initiation factor 2-alpha kinase 32.7.11.10.449
4jib1L6cGMP-dependent 3',5'-cyclic phosphodiesterase3.1.4.170.449
5jtbZMAAdenosine receptor A2a/0.449
3idsNADGlyceraldehyde-3-phosphate dehydrogenase, glycosomal1.2.1.120.448
3vs1VSATyrosine-protein kinase HCK2.7.10.20.448
4fdnFADDecaprenylphosphoryl-beta-D-ribose oxidase/0.448
4hfr14MCorticosteroid 11-beta-dehydrogenase isozyme 11.1.1.1460.448
4j6dTESCytochrome P450 monooxygenase/0.448
4l06NAPIsocitrate dehydrogenase [NADP] cytoplasmic1.1.1.420.448
4nxwADPMitochondrial dynamics protein MID51/0.448
4q72FADBifunctional protein PutA/0.448
5hs1VORLanosterol 14-alpha demethylase/0.448
1kb9SMACytochrome b/0.447
1kgjFL8Transthyretin/0.447
1kk4ACOStreptogramin A acetyltransferase2.3.10.447
1kkq471Peroxisome proliferator-activated receptor alpha/0.447
1ot7IU5Bile acid receptor/0.447
1txiTX5Vitamin D3 receptor/0.447
2gtmLIDMitogen-activated protein kinase 14/0.447
2jn3JN3Fatty acid-binding protein, liver/0.447
2q4wFADCytokinin dehydrogenase 71.5.99.120.447
2vzmNRBCytochrome P450 monooxygenase PikC/0.447
3bbtFMMReceptor tyrosine-protein kinase erbB-42.7.10.10.447
3deiRXBCaspase-33.4.22.560.447
3t2zFADSulfide-quinone reductase/0.447
3uteFADUDP-galactopyranose mutase/0.447
4caxMYAGlycylpeptide N-tetradecanoyltransferase2.3.1.970.447
4ez72ANCyclin-dependent kinase 22.7.11.220.447
4jbtASDCytochrome P450 monooxygenase/0.447
4k2xFADPolyketide oxygenase/hydroxylase/0.447
4y8wSTRSteroid 21-hydroxylase/0.447
4yduADPtRNA N6-adenosine threonylcarbamoyltransferase/0.447
1kr2TADNicotinamide/nicotinic acid mononucleotide adenylyltransferase 12.7.7.10.446
2ibzSMACytochrome b/0.446
2obyNAPQuinone oxidoreductase PIG310.446
2po7CHDFerrochelatase, mitochondrial4.99.1.10.446
2qu6857Vascular endothelial growth factor receptor 22.7.10.10.446
3gggNADPrephenate dehydrogenase/0.446
3is9AC7Gag-Pol polyprotein2.7.7.490.446
3iupNDPPossible NADH oxidoreductase/0.446
3vtcTK3Vitamin D3 receptor/0.446
3wmxNADNAD dependent epimerase/dehydratase/0.446
4at0FADPossible succinate dehydrogenase/0.446
4ez8DHFThymidylate synthase2.1.1.450.446
4nr42LKCREB-binding protein/0.446
4u8nFDAUDP-galactopyranose mutase/0.446
5uviZMAAdenosine receptor A2a/0.446
1r6g442Thyroid hormone receptor beta/0.445
1rf9DBRCamphor 5-monooxygenase1.14.15.10.445
2b365PPEnoyl-[acyl-carrier-protein] reductase [NADH]1.3.1.90.445
2c6hPXICytochrome P450 monooxygenase PikC/0.445
2yaaATPDeath-associated protein kinase 2/0.445
3dopNAP3-oxo-5-beta-steroid 4-dehydrogenase/0.445
3e2sFADBifunctional protein PutA1.5.5.20.445
3inmNDPIsocitrate dehydrogenase [NADP] cytoplasmic1.1.1.420.445
3mkhFADNitroalkane oxidase/0.445
3vs0VS0Tyrosine-protein kinase HCK2.7.10.20.445
3vs7KS1Tyrosine-protein kinase HCK2.7.10.20.445
4g3jVNTLanosterol 14-alpha-demethylase/0.445
4kzoNAPIsocitrate dehydrogenase [NADP] cytoplasmic1.1.1.420.445
4uhrNGIAdenosine receptor A2a/0.445
1ezvSMACytochrome b/0.444
1p44GEQEnoyl-[acyl-carrier-protein] reductase [NADH]1.3.1.90.444
1zyjBI5Mitogen-activated protein kinase 14/0.444
2c6eHPMAurora kinase A2.7.11.10.444
2p4iMR9Angiopoietin-1 receptor2.7.10.10.444
2pobGW4Peroxisome proliferator-activated receptor gamma/0.444
3bfa9ODOdorant binding protein ASP1/0.444
3hjaNADGlyceraldehyde-3-phosphate dehydrogenase/0.444
3hp552PMitogen-activated protein kinase 14/0.444
3kveFADL-amino-acid oxidase/0.444
3sgtP09Ditrans,polycis-undecaprenyl-diphosphate synthase ((2E,6E)-farnesyl-diphosphate specific)/0.444
3zuxTCHTransporter/0.444
4cnjFADL-amino acid oxidase/0.444
4ia7BIVVitamin D3 receptor A/0.444
1hvyD16Thymidylate synthase2.1.1.450.443
1k6cMK1Gag-Pol polyprotein3.4.23.160.443
1x8lOXRRetinol dehydratase/0.443
2ca0PXICytochrome P450 monooxygenase PikC/0.443
2fznFADBifunctional protein PutA1.5.5.20.443
2rr1W8RGenome polyprotein/0.443
3dhoB2MStreptogramin A acetyltransferase2.3.10.443
3f46I2C5,10-methenyltetrahydromethanopterin hydrogenase1.12.98.20.443
3h86AP5Adenylate kinase/0.443
3hng8STVascular endothelial growth factor receptor 12.7.10.10.443
3lj3WYEPhosphatidylinositol 4,5-bisphosphate 3-kinase catalytic subunit gamma isoform2.7.1.1530.443
3ntgD72Prostaglandin G/H synthase 21.14.99.10.443
3vt8YI3Vitamin D3 receptor/0.443
3zk5Z18Cytochrome P450 monooxygenase PikC/0.443
4gdeFDAUDP-galactopyranose mutase/0.443
4u8jFDAUDP-galactopyranose mutase/0.443
5ag7MYAGlycylpeptide N-tetradecanoyltransferase/0.443
4z34ON7Lysophosphatidic acid receptor 1/0.443
1d4aFADNAD(P)H dehydrogenase [quinone] 11.6.5.20.442
1jolFFODihydrofolate reductase1.5.1.30.442
1tj0FADBifunctional protein PutA1.5.5.20.442
2cig1DGDihydrofolate reductase1.5.1.30.442
2e98B29Ditrans,polycis-undecaprenyl-diphosphate synthase ((2E,6E)-farnesyl-diphosphate specific)2.5.1.310.442
2gtk208Peroxisome proliferator-activated receptor gamma/0.442
2hziJINTyrosine-protein kinase ABL12.7.10.20.442
2q59240Peroxisome proliferator-activated receptor gamma/0.442
2rm2W43Genome polyprotein/0.442
2w0jZATSerine/threonine-protein kinase Chk22.7.11.10.442
3d3eD3ECorticosteroid 11-beta-dehydrogenase isozyme 11.1.1.1460.442
3ncgBK1Calmodulin-domain protein kinase 1, putative/0.442
3sdkP3NProteasome subunit beta type-53.4.25.10.442
3sdkP3NProteasome subunit beta type-63.4.25.10.442
3tqhNDPQuinone oxidoreductase/0.442
4ftkH9KSerine/threonine-protein kinase Chk12.7.11.10.442
4fv2EK5Mitogen-activated protein kinase 12.7.11.240.442
4nmdFDABifunctional protein PutA/0.442
4qi5FADCellobiose dehydrogenase/0.442
4tzk641Enoyl-[acyl-carrier-protein] reductase [NADH]1.3.1.90.442
4u8pFDAUDP-galactopyranose mutase/0.442
4yt5H4MH(2)-forming methylenetetrahydromethanopterin dehydrogenase-related protein MJ1338/0.442
1fmlRTLRetinol dehydratase/0.441
1jipKTN6-deoxyerythronolide B hydroxylase/0.441
1jq5NADGlycerol dehydrogenase1.1.1.60.441
1pjkANPCasein kinase II subunit alpha2.7.11.10.441
1pz1NAPGeneral stress protein 69/0.441
1zgdNAPChalcone reductase/0.441
2apgFADFlavin-dependent tryptophan halogenase PrnA1.14.19.90.441
2q9fC3SCholesterol 24-hydroxylase/0.441
2znnS44Peroxisome proliferator-activated receptor alpha/0.441
3caqNDP3-oxo-5-beta-steroid 4-dehydrogenase/0.441
3cyz9ODPheromone-binding protein ASP1/0.441
3dmtNADGlyceraldehyde-3-phosphate dehydrogenase, glycosomal1.2.1.120.441
3qd43Q63-phosphoinositide-dependent protein kinase 12.7.11.10.441
3t8xT8XT-cell surface glycoprotein CD1b/0.441
3th8TH9Ditrans,polycis-undecaprenyl-diphosphate synthase ((2E,6E)-farnesyl-diphosphate specific)2.5.1.310.441
3vt3VDXVitamin D3 receptor/0.441
3vtbTKAVitamin D3 receptor/0.441
4i3vNADAldehyde dehydrogenase (NAD+)/0.441
4ia3BIVVitamin D3 receptor A/0.441
4j6bPLOCytochrome P450 monooxygenase/0.441
4jqh1MFAlr2278 protein/0.441
1cf3FADGlucose oxidase1.1.3.40.440
2ylwFADPhenylacetone monooxygenase1.14.13.920.440
3uzwNAP3-oxo-5-beta-steroid 4-dehydrogenase/0.440
3vs5VSGTyrosine-protein kinase HCK2.7.10.20.440
3w0aDS5Vitamin D3 receptor/0.440
3w2cN15Aurora kinase A2.7.11.10.440
4gddFADUDP-galactopyranose mutase/0.440
4kuhCAA3-hydroxybutyryl-CoA dehydrogenase/0.440
4lgh0JNProto-oncogene tyrosine-protein kinase Src2.7.10.20.440