2.300 Å
X-ray
2011-02-18
Name: | Death-associated protein kinase 2 |
---|---|
ID: | DAPK2_MOUSE |
AC: | Q8VDF3 |
Organism: | Mus musculus |
Reign: | Eukaryota |
TaxID: | 10090 |
EC Number: | / |
Chain Name: | Percentage of Residues within binding site |
---|---|
A | 100 % |
B-Factor: | 25.834 |
---|---|
Number of residues: | 31 |
Including | |
Standard Amino Acids: | 31 |
Non Standard Amino Acids: | 0 |
Water Molecules: | 0 |
Cofactors: | |
Metals: |
Ligandability | Volume (Å3) |
---|---|
1.012 | 1002.375 |
% Hydrophobic | % Polar |
---|---|
48.82 | 51.18 |
According to VolSite |
HET Code: | ATP |
---|---|
Formula: | C10H12N5O13P3 |
Molecular weight: | 503.149 g/mol |
DrugBank ID: | DB00171 |
Buried Surface Area: | 57.68 % |
Polar Surface area: | 319.88 Å2 |
Number of | |
---|---|
H-Bond Acceptors: | 17 |
H-Bond Donors: | 3 |
Rings: | 3 |
Aromatic rings: | 2 |
Anionic atoms: | 4 |
Cationic atoms: | 0 |
Rule of Five Violation: | 2 |
Rotatable Bonds: | 8 |
X | Y | Z |
---|---|---|
-22.9768 | -7.61432 | -29.9858 |
Represent the protein/ligand binding mode, centered on the ligand
Dashed lines represents hydrogen bonds and metal interactions
Green residue labels for amino acids with hydrophobic contacts (green lines) to the ligand
Ligand | Protein | Interaction | |||
---|---|---|---|---|---|
Atom | Atom | Residue | Distance (Å) | Angle (°) | Type |
O2G | N | GLN- 23 | 3.35 | 166.54 | H-Bond (Protein Donor) |
C1' | CG2 | VAL- 27 | 4.14 | 0 | Hydrophobic |
O1B | NZ | LYS- 42 | 2.97 | 134.04 | H-Bond (Protein Donor) |
O2A | NZ | LYS- 42 | 3.14 | 125.8 | H-Bond (Protein Donor) |
O1B | NZ | LYS- 42 | 2.97 | 0 | Ionic (Protein Cationic) |
O2A | NZ | LYS- 42 | 3.14 | 0 | Ionic (Protein Cationic) |
N6 | O | GLU- 94 | 2.81 | 145.75 | H-Bond (Ligand Donor) |
N1 | N | VAL- 96 | 3.28 | 165.53 | H-Bond (Protein Donor) |
C2' | SD | MET- 146 | 4.14 | 0 | Hydrophobic |
C3' | CD1 | ILE- 160 | 3.47 | 0 | Hydrophobic |
O1G | OD2 | ASP- 161 | 2.78 | 157.48 | H-Bond (Protein Donor) |
C5' | CB | ASP- 161 | 4.18 | 0 | Hydrophobic |