2.000 Å
X-ray
2012-11-26
Name: | Aldehyde dehydrogenase (NAD+) |
---|---|
ID: | Q92UV7_RHIME |
AC: | Q92UV7 |
Organism: | Rhizobium meliloti |
Reign: | Bacteria |
TaxID: | 266834 |
EC Number: | / |
Chain Name: | Percentage of Residues within binding site |
---|---|
E | 100 % |
B-Factor: | 27.696 |
---|---|
Number of residues: | 32 |
Including | |
Standard Amino Acids: | 30 |
Non Standard Amino Acids: | 0 |
Water Molecules: | 2 |
Cofactors: | |
Metals: |
Ligandability | Volume (Å3) |
---|---|
1.439 | 894.375 |
% Hydrophobic | % Polar |
---|---|
62.26 | 37.74 |
According to VolSite |
HET Code: | NAD |
---|---|
Formula: | C21H26N7O14P2 |
Molecular weight: | 662.417 g/mol |
DrugBank ID: | - |
Buried Surface Area: | 53.78 % |
Polar Surface area: | 343.54 Å2 |
Number of | |
---|---|
H-Bond Acceptors: | 18 |
H-Bond Donors: | 6 |
Rings: | 5 |
Aromatic rings: | 3 |
Anionic atoms: | 2 |
Cationic atoms: | 1 |
Rule of Five Violation: | 3 |
Rotatable Bonds: | 11 |
X | Y | Z |
---|---|---|
49.3622 | 28.9497 | 101.869 |
Represent the protein/ligand binding mode, centered on the ligand
Dashed lines represents hydrogen bonds and metal interactions
Green residue labels for amino acids with hydrophobic contacts (green lines) to the ligand
Ligand | Protein | Interaction | |||
---|---|---|---|---|---|
Atom | Atom | Residue | Distance (Å) | Angle (°) | Type |
C1B | CG2 | ILE- 154 | 3.78 | 0 | Hydrophobic |
C4B | CG2 | ILE- 154 | 3.64 | 0 | Hydrophobic |
O3B | O | THR- 155 | 2.79 | 157.01 | H-Bond (Ligand Donor) |
C5B | CB | PRO- 156 | 4.43 | 0 | Hydrophobic |
O5D | N | PHE- 157 | 3.42 | 138.91 | H-Bond (Protein Donor) |
O3B | NZ | LYS- 181 | 2.92 | 149.41 | H-Bond (Protein Donor) |
O2B | NZ | LYS- 181 | 3.24 | 140.9 | H-Bond (Protein Donor) |
C3B | CB | THR- 183 | 3.83 | 0 | Hydrophobic |
O2B | OE1 | GLU- 184 | 3.37 | 136.07 | H-Bond (Ligand Donor) |
C4B | CE1 | PHE- 232 | 3.66 | 0 | Hydrophobic |
O1A | N | SER- 235 | 2.74 | 164.25 | H-Bond (Protein Donor) |
O1A | OG | SER- 235 | 2.58 | 165.93 | H-Bond (Protein Donor) |
O3 | N | SER- 235 | 3.32 | 126.03 | H-Bond (Protein Donor) |