3.000 Å
X-ray
2008-07-24
| Name: | DNA-directed RNA polymerase subunit beta | DNA-directed RNA polymerase subunit beta' |
|---|---|---|
| ID: | RPOB_THET8 | RPOC_THET8 |
| AC: | Q8RQE9 | Q8RQE8 |
| Organism: | Thermus thermophilus | |
| Reign: | Bacteria | |
| TaxID: | 300852 | |
| EC Number: | / | |
| Chain Name: | Percentage of Residues within binding site |
|---|---|
| M | 37 % |
| N | 63 % |
| B-Factor: | 62.119 |
|---|---|
| Number of residues: | 43 |
| Including | |
| Standard Amino Acids: | 43 |
| Non Standard Amino Acids: | 0 |
| Water Molecules: | 0 |
| Cofactors: | |
| Metals: | |
| Ligandability | Volume (Å3) |
|---|---|
| 1.703 | 985.500 |
| % Hydrophobic | % Polar |
|---|---|
| 63.01 | 36.99 |
| According to VolSite | |

| HET Code: | NE6 |
|---|---|
| Formula: | C23H31NO6 |
| Molecular weight: | 417.495 g/mol |
| DrugBank ID: | DB08266 |
| Buried Surface Area: | 55.24 % |
| Polar Surface area: | 99.1 Å2 |
| Number of | |
|---|---|
| H-Bond Acceptors: | 7 |
| H-Bond Donors: | 0 |
| Rings: | 1 |
| Aromatic rings: | 0 |
| Anionic atoms: | 0 |
| Cationic atoms: | 0 |
| Rule of Five Violation: | 1 |
| Rotatable Bonds: | 11 |
| X | Y | Z |
|---|---|---|
| 163.449 | -29.3677 | 46.307 |
Image generated by PoseView
Represent the protein/ligand binding mode, centered on the ligand
Dashed lines represents hydrogen bonds and metal interactions
Green residue labels for amino acids with hydrophobic contacts (green lines) to the ligand
| Ligand | Protein | Interaction | |||
|---|---|---|---|---|---|
| Atom | Atom | Residue | Distance (Å) | Angle (°) | Type |
| C21 | CZ | PHE- 614 | 3.49 | 0 | Hydrophobic |
| C22 | CZ | PHE- 614 | 4.09 | 0 | Hydrophobic |
| C23 | CE1 | PHE- 614 | 3.41 | 0 | Hydrophobic |
| C21 | CD2 | LEU- 619 | 3.31 | 0 | Hydrophobic |
| C10 | CG2 | VAL- 1037 | 3.98 | 0 | Hydrophobic |
| C9 | CG2 | VAL- 1037 | 4.04 | 0 | Hydrophobic |
| O14 | NE1 | TRP- 1038 | 3.21 | 125.96 | H-Bond (Protein Donor) |
| C8 | CD2 | LEU- 1053 | 4.35 | 0 | Hydrophobic |
| C17 | CB | SER- 1084 | 3.81 | 0 | Hydrophobic |
| C17 | CD2 | LEU- 1088 | 3.95 | 0 | Hydrophobic |
| C14 | CB | VAL- 1099 | 4.48 | 0 | Hydrophobic |
| C14 | CB | HIS- 1103 | 3.24 | 0 | Hydrophobic |
| C14 | CD1 | ILE- 1223 | 3.56 | 0 | Hydrophobic |
| C24 | CB | ALA- 1438 | 4.49 | 0 | Hydrophobic |
| C24 | CG2 | THR- 1443 | 3.77 | 0 | Hydrophobic |
| C14 | CB | LYS- 1463 | 4.41 | 0 | Hydrophobic |
| C10 | CG1 | VAL- 1466 | 3.82 | 0 | Hydrophobic |
| C17 | CG1 | ILE- 1467 | 4.43 | 0 | Hydrophobic |
| C21 | CD1 | ILE- 1467 | 4.02 | 0 | Hydrophobic |
| C22 | CD1 | ILE- 1467 | 3.5 | 0 | Hydrophobic |