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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Binding site similarity measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Binding Sites are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
Binding Sites are considered as similar when the similarity value is greater than 0.44

Reference Protein Data Bank Entry :
PDB IDHETUniprot NameEC Number
1fnbFADFerredoxin--NADP reductase, chloroplastic1.18.1.2

Complex with similar binding sites

PDB ID HET Uniprot Name EC Number Binding Site
Similarity		 Align
1fnbFADFerredoxin--NADP reductase, chloroplastic1.18.1.21.000
1bx1FADFerredoxin--NADP reductase, chloroplastic1.18.1.20.833
4af7FADFerredoxin--NADP reductase, leaf isozyme, chloroplastic1.18.1.20.702
1bx0FADFerredoxin--NADP reductase, chloroplastic1.18.1.20.673
1gawFADFerredoxin/0.643
3vo2FADFerredoxin--NADP reductase/0.638
3zc3FADFerredoxin--NADP reductase1.18.1.20.615
1gaqFADFerredoxin/0.611
1fncFDAFerredoxin--NADP reductase, chloroplastic1.18.1.20.610
3mhpFADFerredoxin--NADP reductase, leaf isozyme, chloroplastic1.18.1.20.609
1gjrFADFerredoxin--NADP reductase1.18.1.20.608
1sm4FADFerredoxin--NADP reductase/0.600
4c43FADFerredoxin--NADP reductase1.18.1.20.599
2rc6FADFerredoxin--NADP reductase/0.591
1w35FADFerredoxin--NADP reductase1.18.1.20.590
1e64FADFerredoxin--NADP reductase1.18.1.20.587
1fndFADFerredoxin--NADP reductase, chloroplastic1.18.1.20.586
1go2FADFerredoxin--NADP reductase1.18.1.20.585
1qgyFADFerredoxin--NADP reductase1.18.1.20.585
1h85FADFerredoxin--NADP reductase1.18.1.20.584
4af6FADFerredoxin--NADP reductase, leaf isozyme, chloroplastic1.18.1.20.581
3w5uFADFerredoxin/0.579
1qh0FADFerredoxin--NADP reductase1.18.1.20.576
4bprFADFerredoxin--NADP reductase1.18.1.20.567
2b5oFADFerredoxin--NADP reductase1.18.1.20.562
1h42FADFerredoxin--NADP reductase1.18.1.20.561
1queFADFerredoxin--NADP reductase1.18.1.20.559
1bjkFADFerredoxin--NADP reductase1.18.1.20.556
3zbtFADFerredoxin--NADP reductase1.18.1.20.549
4yaoFADNADPH--cytochrome P450 reductase/0.549
1ogiFADFerredoxin--NADP reductase1.18.1.20.546
1gr1FADFerredoxin--NADP reductase1.18.1.20.544
2ok8FADFerredoxin--NADP reductase, apicoplast/0.542
1ogjFADFerredoxin--NADP reductase1.18.1.20.540
1j9zFADNADPH--cytochrome P450 reductase/0.524
3jqrFADFerredoxin--NADP reductase, apicoplast/0.522
1ja1FADNADPH--cytochrome P450 reductase/0.521
3fpkFADFerredoxin-NADP reductase/0.521
1b2rFADFerredoxin--NADP reductase1.18.1.20.519
1w87FADFerredoxin--NADP reductase1.18.1.20.517
4y9uFADNADPH--cytochrome P450 reductase/0.516
1amoFADNADPH--cytochrome P450 reductase/0.511
3qe2FADNADPH--cytochrome P450 reductase/0.509
1ewyFADFerredoxin--NADP reductase1.18.1.20.507
4y9rFADNADPH--cytochrome P450 reductase/0.507
1e63FADFerredoxin--NADP reductase1.18.1.20.506
3qftFADNADPH--cytochrome P450 reductase/0.506
1e62FADFerredoxin--NADP reductase1.18.1.20.505
2vnjFADNADPH:ferredoxin reductase/0.502
4uajFADNa(+)-translocating NADH-quinone reductase subunit F/0.502
3qfsFADNADPH--cytochrome P450 reductase/0.497
2rc5FADFerredoxin--NADP reductase/0.496
1qgzFADFerredoxin--NADP reductase1.18.1.20.494
3qfcFADNADPH--cytochrome P450 reductase/0.494
4a322CDGlycylpeptide N-tetradecanoyltransferase/0.488
3ojxFADNADPH--cytochrome P450 reductase/0.485
2bgjFADNADPH:ferredoxin reductase/0.484
4yafFADNADPH--cytochrome P450 reductase/0.484
1tllFADNitric oxide synthase, brain1.14.13.390.482
2r6hFADNa(+)-translocating NADH-quinone reductase subunit F/0.475
3c1oNAPEugenol synthase/0.475
1krhFADBenzoate 1,2-dioxygenase electron transfer component1.18.1.30.473
2xncFADFerredoxin--NADP reductase, leaf isozyme, chloroplastic1.18.1.20.471
3busSAHDemethylrebeccamycin-D-glucose O-methyltransferase/0.469
5dp2NAPCurF/0.469
1fdrFADFerredoxin--NADP reductase1.18.1.20.467
4a30QMIGlycylpeptide N-tetradecanoyltransferase/0.467
4b144XBGlycylpeptide N-tetradecanoyltransferase/0.467
2bpoFADNADPH--cytochrome P450 reductase/0.466
4c2z646Glycylpeptide N-tetradecanoyltransferase 1/0.465
2piaFMNPhthalate dioxygenase reductase/0.464
2vnkFADNADPH:ferredoxin reductase/0.464
1a8pFADFerredoxin--NADP reductase/0.463
1w34FADFerredoxin--NADP reductase1.18.1.20.463
1x1bSAHC-20 methyltransferase/0.462
2uxoTACHTH-type transcriptional regulator TtgR/0.459
4b7754MBeta-secretase 13.4.23.460.459
4q0kGA3Phytohormone-binding protein/0.458
1ay0TPPTransketolase 12.2.1.10.457
2bf4FADNADPH--cytochrome P450 reductase/0.456
2gesCOKPantothenate kinase2.7.1.330.455
3ojwFMNNADPH--cytochrome P450 reductase/0.455
4b13X25Glycylpeptide N-tetradecanoyltransferase/0.455
4b4dFADFerredoxin-NADP reductase/0.455
4f1l0RYPoly [ADP-ribose] polymerase 142.4.2.300.455
4fk8FADFerredoxin--NADP reductase/0.454
1nquRDL6,7-dimethyl-8-ribityllumazine synthase2.5.1.780.453
1nupNMNNicotinamide/nicotinic acid mononucleotide adenylyltransferase 3/0.453
1xddAAYIntegrin alpha-L/0.453
4bfvZVVPantothenate kinase2.7.1.330.453
1oxoIK2Aspartate aminotransferase, mitochondrial2.6.1.10.452
4b117I1Glycylpeptide N-tetradecanoyltransferase/0.452
1ps9MDE2,4-dienoyl-CoA reductase1.3.1.340.451
3abxRCBGlucanase/0.451
2ewmNAD(S)-1-Phenylethanol dehydrogenase1.1.1.3110.450
2vn1FK5Peptidylprolyl isomerase/0.450
2xlrFADPutative flavin-containing monooxygenase/0.450
4yaoFMNNADPH--cytochrome P450 reductase/0.450
1q0rAKTAclacinomycin methylesterase RdmC3.1.1.950.449
3frkTQPQdtB/0.449
4xwtU5PRibonuclease J/0.449
3qe2FMNNADPH--cytochrome P450 reductase/0.448
3qfrFMNNADPH--cytochrome P450 reductase/0.448
4acuQN7Beta-secretase 13.4.23.460.448
4acxS8ZBeta-secretase 13.4.23.460.448
4h3f10OBeta-secretase 13.4.23.460.448
1amoFMNNADPH--cytochrome P450 reductase/0.447
2ivpATPtRNA N6-adenosine threonylcarbamoyltransferase/0.447
2wsa646Glycylpeptide N-tetradecanoyltransferase/0.447
3intFDAUDP-galactopyranose mutase5.4.99.90.447
3q43D66M1 family aminopeptidase3.4.110.447
4b12C23Glycylpeptide N-tetradecanoyltransferase/0.447
4pl0ANPMicrocin-J25 export ATP-binding/permease protein McjD/0.447
5a4vQUEGlutathione S-transferase F22.5.1.180.447
1f20FADNitric oxide synthase, brain1.14.13.390.446
4bcaFADAlkyldihydroxyacetonephosphate synthase, peroxisomal2.5.1.260.446
1ja0FMNNADPH--cytochrome P450 reductase/0.445
1q0zAKAAclacinomycin methylesterase RdmC3.1.1.950.445
4bfxZVXPantothenate kinase2.7.1.330.445
4cax646Glycylpeptide N-tetradecanoyltransferase2.3.1.970.445
5irnADPNucleotide binding oligomerization domain containing 2/0.445
3crzFADFerredoxin--NADP+ reductase/0.444
4bc7FADAlkyldihydroxyacetonephosphate synthase, peroxisomal2.5.1.260.444
1u8vFAD4-hydroxybutyryl-CoA dehydratase/vinylacetyl-CoA-Delta-isomerase/0.443
2a57CRM6,7-dimethyl-8-ribityllumazine synthase2.5.1.780.443
3rsv3RSBeta-secretase 13.4.23.460.443
1fmlRTLRetinol dehydratase/0.442
4b78KGGBeta-secretase 13.4.23.460.442
4bbyFADAlkyldihydroxyacetonephosphate synthase, peroxisomal2.5.1.260.442
2xszATPRuvB-like 23.6.4.120.441
3h3t16HCollagen type IV alpha-3-binding protein/0.441
3q9bB3NAcetylpolyamine amidohydrolase/0.441
1g6oADPCag alpha/0.440
1udtVIAcGMP-specific 3',5'-cyclic phosphodiesterase/0.440
2g25TDKPyruvate dehydrogenase E1 component1.2.4.10.440
2gpjFADSiderophore-interacting protein/0.440
2vnhFADNADPH:ferredoxin reductase/0.440
2vuuNAPNitrogen metabolite repression protein nmrA/0.440
3udk095Beta-secretase 13.4.23.460.440