1.400 Å
X-ray
2009-12-24
Name: | Glucanase |
---|---|
ID: | B7X9Z2_COPCI |
AC: | B7X9Z2 |
Organism: | Coprinopsis cinerea |
Reign: | Eukaryota |
TaxID: | 5346 |
EC Number: | / |
Chain Name: | Percentage of Residues within binding site |
---|---|
A | 100 % |
B-Factor: | 11.196 |
---|---|
Number of residues: | 35 |
Including | |
Standard Amino Acids: | 31 |
Non Standard Amino Acids: | 1 |
Water Molecules: | 3 |
Cofactors: | |
Metals: |
Ligandability | Volume (Å3) |
---|---|
0.748 | 1697.625 |
% Hydrophobic | % Polar |
---|---|
37.57 | 62.43 |
According to VolSite |
HET Code: | RCB |
---|---|
Formula: | C24H35NO18 |
Molecular weight: | 625.531 g/mol |
DrugBank ID: | - |
Buried Surface Area: | 44.67 % |
Polar Surface area: | 303.5 Å2 |
Number of | |
---|---|
H-Bond Acceptors: | 18 |
H-Bond Donors: | 10 |
Rings: | 4 |
Aromatic rings: | 1 |
Anionic atoms: | 1 |
Cationic atoms: | 1 |
Rule of Five Violation: | 3 |
Rotatable Bonds: | 10 |
X | Y | Z |
---|---|---|
-9.74959 | -1.93328 | 0.183219 |
Represent the protein/ligand binding mode, centered on the ligand
Dashed lines represents hydrogen bonds and metal interactions
Green residue labels for amino acids with hydrophobic contacts (green lines) to the ligand
Ligand | Protein | Interaction | |||
---|---|---|---|---|---|
Atom | Atom | Residue | Distance (Å) | Angle (°) | Type |
C1C | CZ3 | TRP- 61 | 4.14 | 0 | Hydrophobic |
C2B | CB | TRP- 61 | 4.5 | 0 | Hydrophobic |
C2D | CH2 | TRP- 61 | 3.17 | 0 | Hydrophobic |
C5C | CD2 | TRP- 61 | 3.66 | 0 | Hydrophobic |
C3C | CB | SER- 63 | 4.16 | 0 | Hydrophobic |
C1C | CE2 | TYR- 96 | 4.1 | 0 | Hydrophobic |
C3D | CB | PRO- 149 | 4.28 | 0 | Hydrophobic |
C3D | CB | SER- 236 | 3.41 | 0 | Hydrophobic |
C6C | CD | LYS- 328 | 4 | 0 | Hydrophobic |
O6C | NZ | LYS- 328 | 2.98 | 171.78 | H-Bond (Protein Donor) |
O2B | OE1 | GLU- 332 | 2.73 | 172.72 | H-Bond (Ligand Donor) |
O6C | OE1 | GLU- 332 | 2.61 | 167.94 | H-Bond (Ligand Donor) |
O3D | O | HOH- 588 | 3.33 | 179.97 | H-Bond (Protein Donor) |
O2C | O | HOH- 640 | 2.79 | 179.94 | H-Bond (Protein Donor) |