2.650 Å
X-ray
2008-01-03
| Name: | Demethylrebeccamycin-D-glucose O-methyltransferase |
|---|---|
| ID: | REBMT_NOCAE |
| AC: | Q8KZ94 |
| Organism: | Lechevalieria aerocolonigenes |
| Reign: | Bacteria |
| TaxID: | 68170 |
| EC Number: | / |
| Chain Name: | Percentage of Residues within binding site |
|---|---|
| A | 100 % |
| B-Factor: | 57.337 |
|---|---|
| Number of residues: | 32 |
| Including | |
| Standard Amino Acids: | 32 |
| Non Standard Amino Acids: | 0 |
| Water Molecules: | 0 |
| Cofactors: | |
| Metals: | |
| Ligandability | Volume (Å3) |
|---|---|
| 1.137 | 938.250 |
| % Hydrophobic | % Polar |
|---|---|
| 52.52 | 47.48 |
| According to VolSite | |

| HET Code: | SAH |
|---|---|
| Formula: | C14H20N6O5S |
| Molecular weight: | 384.411 g/mol |
| DrugBank ID: | DB01752 |
| Buried Surface Area: | 62.1 % |
| Polar Surface area: | 212.38 Å2 |
| Number of | |
|---|---|
| H-Bond Acceptors: | 10 |
| H-Bond Donors: | 4 |
| Rings: | 3 |
| Aromatic rings: | 2 |
| Anionic atoms: | 1 |
| Cationic atoms: | 1 |
| Rule of Five Violation: | 1 |
| Rotatable Bonds: | 7 |
| X | Y | Z |
|---|---|---|
| 14.8138 | 28.9205 | 29.075 |
Image generated by PoseView
Represent the protein/ligand binding mode, centered on the ligand
Dashed lines represents hydrogen bonds and metal interactions
Green residue labels for amino acids with hydrophobic contacts (green lines) to the ligand
| Ligand | Protein | Interaction | |||
|---|---|---|---|---|---|
| Atom | Atom | Residue | Distance (Å) | Angle (°) | Type |
| N | O | GLY- 69 | 3.23 | 133.3 | H-Bond (Ligand Donor) |
| O2' | OG | SER- 91 | 3.04 | 152.67 | H-Bond (Ligand Donor) |
| C1' | CG1 | ILE- 92 | 4.46 | 0 | Hydrophobic |
| O3' | OE1 | GLN- 96 | 2.55 | 129.88 | H-Bond (Ligand Donor) |
| N6 | OD1 | ASP- 119 | 3.06 | 144.22 | H-Bond (Ligand Donor) |
| N1 | N | ALA- 120 | 2.96 | 175.98 | H-Bond (Protein Donor) |
| N | O | LEU- 136 | 2.65 | 131.79 | H-Bond (Ligand Donor) |
| CG | CB | GLU- 137 | 4.43 | 0 | Hydrophobic |
| C5' | CB | SER- 138 | 3.93 | 0 | Hydrophobic |