2.650 Å
X-ray
2008-01-03
Name: | Demethylrebeccamycin-D-glucose O-methyltransferase |
---|---|
ID: | REBMT_NOCAE |
AC: | Q8KZ94 |
Organism: | Lechevalieria aerocolonigenes |
Reign: | Bacteria |
TaxID: | 68170 |
EC Number: | / |
Chain Name: | Percentage of Residues within binding site |
---|---|
A | 100 % |
B-Factor: | 57.337 |
---|---|
Number of residues: | 32 |
Including | |
Standard Amino Acids: | 32 |
Non Standard Amino Acids: | 0 |
Water Molecules: | 0 |
Cofactors: | |
Metals: |
Ligandability | Volume (Å3) |
---|---|
1.137 | 938.250 |
% Hydrophobic | % Polar |
---|---|
52.52 | 47.48 |
According to VolSite |
HET Code: | SAH |
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Formula: | C14H20N6O5S |
Molecular weight: | 384.411 g/mol |
DrugBank ID: | DB01752 |
Buried Surface Area: | 62.1 % |
Polar Surface area: | 212.38 Å2 |
Number of | |
---|---|
H-Bond Acceptors: | 10 |
H-Bond Donors: | 4 |
Rings: | 3 |
Aromatic rings: | 2 |
Anionic atoms: | 1 |
Cationic atoms: | 1 |
Rule of Five Violation: | 1 |
Rotatable Bonds: | 7 |
X | Y | Z |
---|---|---|
14.8138 | 28.9205 | 29.075 |
Represent the protein/ligand binding mode, centered on the ligand
Dashed lines represents hydrogen bonds and metal interactions
Green residue labels for amino acids with hydrophobic contacts (green lines) to the ligand
Ligand | Protein | Interaction | |||
---|---|---|---|---|---|
Atom | Atom | Residue | Distance (Å) | Angle (°) | Type |
N | O | GLY- 69 | 3.23 | 133.3 | H-Bond (Ligand Donor) |
O2' | OG | SER- 91 | 3.04 | 152.67 | H-Bond (Ligand Donor) |
C1' | CG1 | ILE- 92 | 4.46 | 0 | Hydrophobic |
O3' | OE1 | GLN- 96 | 2.55 | 129.88 | H-Bond (Ligand Donor) |
N6 | OD1 | ASP- 119 | 3.06 | 144.22 | H-Bond (Ligand Donor) |
N1 | N | ALA- 120 | 2.96 | 175.98 | H-Bond (Protein Donor) |
N | O | LEU- 136 | 2.65 | 131.79 | H-Bond (Ligand Donor) |
CG | CB | GLU- 137 | 4.43 | 0 | Hydrophobic |
C5' | CB | SER- 138 | 3.93 | 0 | Hydrophobic |