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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3bus SAH Demethylrebeccamycin-D-glucose O-methyltransferase

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
3bus SAHDemethylrebeccamycin-D-glucose O-methyltransferase / 0.838
1g7u PEP2-dehydro-3-deoxyphosphooctonate aldolase 2.5.1.55 0.744
4e5i 0N9Polymerase acidic protein / 0.744
2p35 SAHTrans-aconitate 2-methyltransferase / 0.711
3uj8 SFGPhosphoethanolamine N-methyltransferase / 0.697
4qdk SAHMagnesium-protoporphyrin O-methyltransferase 2.1.1.11 0.688
3b5i SAHIndole-3-acetate O-methyltransferase 1 / 0.680
1ri4 SAMmRNA cap guanine-N7 methyltransferase 2.1.1.56 0.676
3grr SAHProbable ribosomal RNA small subunit methyltransferase A / 0.676
4pne SAHMethyltransferase-like protein / 0.673
1x1c SAHC-20 methyltransferase / 0.668
1qao SAMrRNA adenine N-6-methyltransferase 2.1.1.184 0.667
5f8f SFGPossible transcriptional regulatory protein / 0.666
5il2 SAHN6-adenosine-methyltransferase 70 kDa subunit / 0.666
4ckb SAHmRNA-capping enzyme catalytic subunit 2.1.1.56 0.662
3go4 SAHUncharacterized protein / 0.661
4ckc SAHmRNA-capping enzyme catalytic subunit 2.1.1.56 0.660
4e5f 0N7Polymerase acidic protein / 0.660
1uay ADNOxidoreductase / 0.657
3grv ADNProbable ribosomal RNA small subunit methyltransferase A / 0.657
4e2x SAHMethyltransferase / 0.657
3lga SAHtRNA (adenine(57)-N(1)/adenine(58)-N(1))-methyltransferase TrmI 2.1.1.219 0.656
4iv0 SAMPhosphoethanolamine N-methyltransferase, putative / 0.656
4mwz SAMPhosphoethanolamine N-methyltransferase, putative / 0.656
1eg2 MTAModification methylase RsrI 2.1.1.72 0.655
3uj7 SAMPhosphoethanolamine N-methyltransferase / 0.651
4fgz SAHPhosphoethanolamine N-methyltransferase / 0.651
2yqz SAMUncharacterized protein / 0.650
5f2k SAHUncharacterized protein / 0.650