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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3in6 FMN Uncharacterized protein

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
3in6 FMNUncharacterized protein / 1.261
1i0s FMNFerric-chelate reductase (NAD(P)H) / 0.811
1eje FMNProtein MTH_152 / 0.804
1ep3 FADDihydroorotate dehydrogenase B (NAD(+)), electron transfer subunit / 0.790
3bnk FMNFlavoredoxin / 0.786
3e4v FMNUncharacterized protein / 0.756
4f07 FADStyrene monooxygenase component 2 / 0.755
5cho FADFlavin reductase / 0.746
3w2e FADNADH-cytochrome b5 reductase 3 1.6.2.2 0.745
2gpj FADSiderophore-interacting protein / 0.743
2bgj FADNADPH:ferredoxin reductase / 0.738
1gaw FADFerredoxin / 0.737
2qdx FADFerredoxin--NADP+ reductase / 0.737
4b4d FADFerredoxin-NADP reductase / 0.737
2hq9 FADMll6688 protein / 0.736
2vnj FADNADPH:ferredoxin reductase / 0.736
1i7p FADNADH-cytochrome b5 reductase 3 1.6.2.2 0.734
4hmx FMNPyridoxamine 5'-phosphate oxidase / 0.734
3jqr FADFerredoxin--NADP reductase, apicoplast / 0.731
2pr5 FMNBlue-light photoreceptor / 0.729
2i51 FMNPyridoxamine 5'-phosphate oxidase-related, FMN-binding / 0.728
1ogi FADFerredoxin--NADP reductase 1.18.1.2 0.724
4fk8 FADFerredoxin--NADP reductase / 0.723
1qg0 FADFerredoxin--NADP reductase, leaf isozyme, chloroplastic 1.18.1.2 0.722
4hmw FMNPyridoxamine 5'-phosphate oxidase / 0.721
1fnb FADFerredoxin--NADP reductase, chloroplastic 1.18.1.2 0.719
2z6c FMNPhototropin-1 2.7.11.1 0.718
3fpk FADFerredoxin-NADP reductase / 0.718
3qe2 FADNADPH--cytochrome P450 reductase / 0.718
1h42 FADFerredoxin--NADP reductase 1.18.1.2 0.717
1qgy FADFerredoxin--NADP reductase 1.18.1.2 0.717
3qfs FADNADPH--cytochrome P450 reductase / 0.714
4mih FADPyranose 2-oxidase 1.1.3.10 0.713
4mok FADPyranose 2-oxidase / 0.713
3lsm SFDPyranose 2-oxidase / 0.712
4rhe FMNFlavin prenyltransferase UbiX / 0.712
1bx1 FADFerredoxin--NADP reductase, chloroplastic 1.18.1.2 0.711
3mhp FADFerredoxin--NADP reductase, leaf isozyme, chloroplastic 1.18.1.2 0.710
3lsh FADPyranose 2-oxidase / 0.705
2bgi FADNADPH:ferredoxin reductase / 0.704
3lsi FADPyranose 2-oxidase / 0.703
4hms FMNPhenazine biosynthesis protein PhzG 1.4 0.703
1fnc FDAFerredoxin--NADP reductase, chloroplastic 1.18.1.2 0.702
3eo8 FMNPutative nitroreductase / 0.702
4eer FMNPhototropin-2 2.7.11.1 0.702
2ok8 FADFerredoxin--NADP reductase, apicoplast / 0.701
2vnh FADNADPH:ferredoxin reductase / 0.701
1ja1 FADNADPH--cytochrome P450 reductase / 0.700
3w5h FADNADH-cytochrome b5 reductase 3 1.6.2.2 0.700
1g63 FMNEpidermin decarboxylase 4.1.1 0.699
2ohi FMNType A flavoprotein FprA 1 0.699
1gaq FADFerredoxin / 0.698
2i02 FMNPyridoxamine 5'-phosphate oxidase-related, FMN-binding / 0.698
1e63 FADFerredoxin--NADP reductase 1.18.1.2 0.697
1e64 FADFerredoxin--NADP reductase 1.18.1.2 0.697
2bn4 FADNADPH--cytochrome P450 reductase / 0.697
1gr1 FADFerredoxin--NADP reductase 1.18.1.2 0.696
2ohh FMNType A flavoprotein FprA 1 0.696
3qfr FADNADPH--cytochrome P450 reductase / 0.696
1que FADFerredoxin--NADP reductase 1.18.1.2 0.695
3vo2 FADFerredoxin--NADP reductase / 0.695
1bx0 FADFerredoxin--NADP reductase, chloroplastic 1.18.1.2 0.694
2ign FADPyranose 2-oxidase / 0.693
1gjr FADFerredoxin--NADP reductase 1.18.1.2 0.691
3bm1 FMNPutative NAD(P)H nitroreductase YdjA / 0.691
4hhd FMNPhototropin-1 2.7.11.1 0.691
1fdr FADFerredoxin--NADP reductase 1.18.1.2 0.690
1pkv RBFRiboflavin synthase 2.5.1.9 0.690
1sm4 FADFerredoxin--NADP reductase / 0.689
2rc5 FADFerredoxin--NADP reductase / 0.689
4yaf FADNADPH--cytochrome P450 reductase / 0.689
1go2 FADFerredoxin--NADP reductase 1.18.1.2 0.687
1qh0 FADFerredoxin--NADP reductase 1.18.1.2 0.687
2ok7 FADFerredoxin--NADP reductase, apicoplast / 0.687
3a3b RBFLumazine protein / 0.687
1fnd FADFerredoxin--NADP reductase, chloroplastic 1.18.1.2 0.686
5f12 FMNNAD(P)H dehydrogenase (quinone) / 0.686
1ogj FADFerredoxin--NADP reductase 1.18.1.2 0.685
1ycf FMNNitric oxide reductase 1 0.684
4y9u FADNADPH--cytochrome P450 reductase / 0.684
1ewy FADFerredoxin--NADP reductase 1.18.1.2 0.683
4af6 FADFerredoxin--NADP reductase, leaf isozyme, chloroplastic 1.18.1.2 0.683
1usc FMNMonooxygenase / 0.682
1wv4 FMNPyridoxine/pyridoxamine 5'-phosphate oxidase / 0.682
2xnc FADFerredoxin--NADP reductase, leaf isozyme, chloroplastic 1.18.1.2 0.681
3k4c FADPyranose 2-oxidase / 0.681
1akr FMNFlavodoxin / 0.679
1ryi FADGlycine oxidase 1.4.3.19 0.679
1tll FADNitric oxide synthase, brain 1.14.13.39 0.679
1v5e FADPyruvate oxidase / 0.679
3if9 FADGlycine oxidase 1.4.3.19 0.679
3r5y F42Uncharacterized protein / 0.679
1wlk FMNFMN-binding protein / 0.678
3gag FMNPutative NADH dehydrogenase NAD(P)H nitroreductase / 0.678
3gh8 FMNIodotyrosine deiodinase 1 1.21.1.1 0.678
1umk FADNADH-cytochrome b5 reductase 3 1.6.2.2 0.677
2pia FMNPhthalate dioxygenase reductase / 0.677
3ka7 FADPutative oxidoreductase / 0.677
3rha FDAPutrescine oxidase / 0.677
4kuk RBFPutative blue-light photoreceptor / 0.676
1h85 FADFerredoxin--NADP reductase 1.18.1.2 0.675
1ty9 FMNPhenazine biosynthesis protein PhzG 1.4 0.675
2b5o FADFerredoxin--NADP reductase 1.18.1.2 0.674
3ept FDAPutative FAD-monooxygenase / 0.674
4eeu FMNPhototropin-2 2.7.11.1 0.674
1efp FADElectron transfer flavoprotein subunit alpha / 0.673
4ylf FADDihydroorotate dehydrogenase B (NAD(+)), electron transfer subunit homolog / 0.672
3qft FADNADPH--cytochrome P450 reductase / 0.671
1krh FADBenzoate 1,2-dioxygenase electron transfer component 1.18.1.3 0.670
2iyg FMNAppA, antirepressor of ppsR, sensor of blue light / 0.670
2pdt FADVivid PAS protein VVD / 0.670
1n07 FMNRiboflavin kinase 2.7.1.26 0.669
1tll FMNNitric oxide synthase, brain 1.14.13.39 0.669
1ycg FMNNitric oxide reductase 1 0.669
3esy FMNFlavodoxin / 0.669
3r5w F42Deazaflavin-dependent nitroreductase / 0.669
2reh FADNitroalkane oxidase 1.7.3.1 0.668
3qfc FADNADPH--cytochrome P450 reductase / 0.668
3zho FMNNAD(P)H dehydrogenase (quinone) / 0.668
4j8p FMNFlavodoxin / 0.668
1pow FADPyruvate oxidase 1.2.3.3 0.667
2iyi FMNAppA, antirepressor of ppsR, sensor of blue light / 0.667
3ojw FADNADPH--cytochrome P450 reductase / 0.666
4hsu FADLysine-specific histone demethylase 1B 1 0.665
4fwe FADLysine-specific histone demethylase 1B 1 0.664
4yau FADNADPH--cytochrome P450 reductase / 0.664
1azl FMNFlavodoxin / 0.663
3ab1 FADFerredoxin--NADP reductase 1.18.1.2 0.663
3mzi FMNActivator of photopigment and puc expression / 0.663
1ebd FADDihydrolipoyl dehydrogenase 1.8.1.4 0.662
3hjk FADVivid PAS protein VVD / 0.662
4fwj FADLysine-specific histone demethylase 1B 1 0.662
4k1x FADNADPH:ferredoxin reductase / 0.662
2yg3 FADPutrescine oxidase / 0.661
1ib0 FADNADH-cytochrome b5 reductase 3 1.6.2.2 0.659
1ics FMN12-oxophytodienoate reductase 1 1.3.1.42 0.658
2rc6 FADFerredoxin--NADP reductase / 0.658
1amo FADNADPH--cytochrome P450 reductase / 0.657
1jeh FADDihydrolipoyl dehydrogenase, mitochondrial 1.8.1.4 0.657
1rz1 FADPhenol 2-hydroxylase component B / 0.657
2q3o FMN12-oxophytodienoate reductase 3 1.3.1.42 0.656
1pox FADPyruvate oxidase 1.2.3.3 0.653
3rh7 FMNUncharacterized protein / 0.653
3a6r FMNFMN-binding protein / 0.652
1yrx FMNAppA protein / 0.651
3zbt FADFerredoxin--NADP reductase 1.18.1.2 0.651
4hh0 FMNAppA protein / 0.651
1xpq FADPolyamine oxidase FMS1 / 0.650
1z6l FADPolyamine oxidase FMS1 / 0.650
2bab FADPutative aminooxidase / 0.650
3a6q FMNFMN-binding protein / 0.650
4bmp FMNProtein NrdI / 0.650