2.300 Å
X-ray
2010-05-12
| Name: | Activator of photopigment and puc expression |
|---|---|
| ID: | P74295_SYNY3 |
| AC: | P74295 |
| Organism: | Synechocystis sp. |
| Reign: | Bacteria |
| TaxID: | 1111708 |
| EC Number: | / |
| Chain Name: | Percentage of Residues within binding site |
|---|---|
| F | 100 % |
| B-Factor: | 86.070 |
|---|---|
| Number of residues: | 29 |
| Including | |
| Standard Amino Acids: | 29 |
| Non Standard Amino Acids: | 0 |
| Water Molecules: | 0 |
| Cofactors: | |
| Metals: | |
| Ligandability | Volume (Å3) |
|---|---|
| 0.803 | 543.375 |
| % Hydrophobic | % Polar |
|---|---|
| 53.42 | 46.58 |
| According to VolSite | |

| HET Code: | FMN |
|---|---|
| Formula: | C17H19N4O9P |
| Molecular weight: | 454.328 g/mol |
| DrugBank ID: | DB03247 |
| Buried Surface Area: | 58.04 % |
| Polar Surface area: | 217.05 Å2 |
| Number of | |
|---|---|
| H-Bond Acceptors: | 12 |
| H-Bond Donors: | 4 |
| Rings: | 3 |
| Aromatic rings: | 1 |
| Anionic atoms: | 2 |
| Cationic atoms: | 0 |
| Rule of Five Violation: | 1 |
| Rotatable Bonds: | 7 |
| X | Y | Z |
|---|---|---|
| -30.9368 | 37.8393 | -34.591 |
Image generated by PoseView
Represent the protein/ligand binding mode, centered on the ligand
Dashed lines represents hydrogen bonds and metal interactions
Green residue labels for amino acids with hydrophobic contacts (green lines) to the ligand
| Ligand | Protein | Interaction | |||
|---|---|---|---|---|---|
| Atom | Atom | Residue | Distance (Å) | Angle (°) | Type |
| C6 | CG2 | ILE- 24 | 4.48 | 0 | Hydrophobic |
| C1' | CG2 | ILE- 24 | 4.43 | 0 | Hydrophobic |
| C8M | CD1 | ILE- 24 | 3.58 | 0 | Hydrophobic |
| C9A | CG2 | ILE- 24 | 3.72 | 0 | Hydrophobic |
| C4' | CB | SER- 27 | 3.97 | 0 | Hydrophobic |
| O2P | CZ | ARG- 30 | 3.14 | 0 | Ionic (Protein Cationic) |
| O3P | CZ | ARG- 30 | 3.12 | 0 | Ionic (Protein Cationic) |
| O2 | ND2 | ASN- 31 | 2.67 | 126.21 | H-Bond (Protein Donor) |
| N3 | OD1 | ASN- 32 | 3.06 | 150.16 | H-Bond (Ligand Donor) |
| O4 | ND2 | ASN- 32 | 3.05 | 149.33 | H-Bond (Protein Donor) |
| C6 | CD2 | LEU- 41 | 3.8 | 0 | Hydrophobic |
| C7M | CD2 | PHE- 48 | 3.96 | 0 | Hydrophobic |
| C6 | CD1 | ILE- 66 | 3.84 | 0 | Hydrophobic |
| C7 | CG2 | ILE- 66 | 4.4 | 0 | Hydrophobic |
| C9A | CG1 | ILE- 66 | 4.2 | 0 | Hydrophobic |
| C2' | CB | ASP- 69 | 4.37 | 0 | Hydrophobic |
| C9 | CB | ASP- 69 | 3.95 | 0 | Hydrophobic |
| O2' | OD1 | ASP- 69 | 2.75 | 151.24 | H-Bond (Ligand Donor) |