3.000 Å
X-ray
2011-04-11
Name: | Uncharacterized protein |
---|---|
ID: | Q92ZM6_RHIME |
AC: | Q92ZM6 |
Organism: | Rhizobium meliloti |
Reign: | Bacteria |
TaxID: | 266834 |
EC Number: | / |
Chain Name: | Percentage of Residues within binding site |
---|---|
A | 95 % |
B | 3 % |
E | 3 % |
B-Factor: | 71.456 |
---|---|
Number of residues: | 37 |
Including | |
Standard Amino Acids: | 37 |
Non Standard Amino Acids: | 0 |
Water Molecules: | 0 |
Cofactors: | |
Metals: |
Ligandability | Volume (Å3) |
---|---|
0.676 | 479.250 |
% Hydrophobic | % Polar |
---|---|
32.39 | 67.61 |
According to VolSite |
HET Code: | FMN |
---|---|
Formula: | C17H19N4O9P |
Molecular weight: | 454.328 g/mol |
DrugBank ID: | DB03247 |
Buried Surface Area: | 69.91 % |
Polar Surface area: | 217.05 Å2 |
Number of | |
---|---|
H-Bond Acceptors: | 12 |
H-Bond Donors: | 4 |
Rings: | 3 |
Aromatic rings: | 1 |
Anionic atoms: | 2 |
Cationic atoms: | 0 |
Rule of Five Violation: | 1 |
Rotatable Bonds: | 7 |
X | Y | Z |
---|---|---|
60.185 | 11.2845 | 100.754 |
Represent the protein/ligand binding mode, centered on the ligand
Dashed lines represents hydrogen bonds and metal interactions
Green residue labels for amino acids with hydrophobic contacts (green lines) to the ligand
Ligand | Protein | Interaction | |||
---|---|---|---|---|---|
Atom | Atom | Residue | Distance (Å) | Angle (°) | Type |
C5' | CB | PHE- 37 | 3.45 | 0 | Hydrophobic |
O2' | O | THR- 38 | 2.86 | 172.88 | H-Bond (Ligand Donor) |
C8 | CG2 | THR- 38 | 3.92 | 0 | Hydrophobic |
N5 | N | ASN- 40 | 3.19 | 151.69 | H-Bond (Protein Donor) |
C6 | CB | ASN- 40 | 3.61 | 0 | Hydrophobic |
O4 | N | SER- 41 | 3.32 | 146.48 | H-Bond (Protein Donor) |
N3 | O | CYS- 55 | 2.77 | 151.88 | H-Bond (Ligand Donor) |
O2 | N | ALA- 57 | 2.83 | 161.99 | H-Bond (Protein Donor) |
O3P | N | ARG- 61 | 2.88 | 174.88 | H-Bond (Protein Donor) |
O1P | N | ASN- 62 | 3.47 | 157.98 | H-Bond (Protein Donor) |
O3' | O | ALA- 89 | 2.66 | 175.63 | H-Bond (Ligand Donor) |
C2' | CB | ALA- 89 | 4.44 | 0 | Hydrophobic |
C9 | CB | ALA- 89 | 3.8 | 0 | Hydrophobic |
O5' | NH2 | ARG- 95 | 3.21 | 154.89 | H-Bond (Protein Donor) |
O5' | NH1 | ARG- 95 | 3.36 | 145.92 | H-Bond (Protein Donor) |
C7M | CG | TYR- 151 | 3.72 | 0 | Hydrophobic |
C8 | CD1 | ILE- 286 | 4.49 | 0 | Hydrophobic |
C8M | CB | ILE- 286 | 3.96 | 0 | Hydrophobic |