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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
1usc FMN Monooxygenase

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
1usc FMNMonooxygenase / 1.301
3e4v FMNUncharacterized protein / 0.892
3bnk FMNFlavoredoxin / 0.872
1eje FMNProtein MTH_152 / 0.825
1i0s FMNFerric-chelate reductase (NAD(P)H) / 0.777
1rz1 FADPhenol 2-hydroxylase component B / 0.761
2nr4 FMNConserved protein / 0.743
5cho FADFlavin reductase / 0.739
3w2f FADNADH-cytochrome b5 reductase 3 1.6.2.2 0.735
2ptf FMNUncharacterized protein MTH_863 / 0.726
2i51 FMNPyridoxamine 5'-phosphate oxidase-related, FMN-binding / 0.723
1rz0 FADPhenol 2-hydroxylase component B / 0.722
2pr5 FMNBlue-light photoreceptor / 0.718
3w2e FADNADH-cytochrome b5 reductase 3 1.6.2.2 0.716
3fpk FADFerredoxin-NADP reductase / 0.713
1n9l FMNPutative blue light receptor / 0.710
1pkv RBFRiboflavin synthase 2.5.1.9 0.708
4hms FMNPhenazine biosynthesis protein PhzG 1.4 0.705
1amo FADNADPH--cytochrome P450 reductase / 0.704
3crz FADFerredoxin--NADP+ reductase / 0.701
4f07 FADStyrene monooxygenase component 2 / 0.701
2bgj FADNADPH:ferredoxin reductase / 0.696
4hia FMNLOV protein / 0.696
1cqx FADFlavohemoprotein / 0.695
3t50 FMNBlue-light-activated histidine kinase 2.7.13.3 0.695
4hj6 FMNLOV protein / 0.695
2ok8 FADFerredoxin--NADP reductase, apicoplast / 0.694
2vnk FADNADPH:ferredoxin reductase / 0.693
4eep FMNPhototropin-2 2.7.11.1 0.693
1ylu FMNOxygen-insensitive NAD(P)H nitroreductase / 0.692
2i02 FMNPyridoxamine 5'-phosphate oxidase-related, FMN-binding / 0.692
4b4d FADFerredoxin-NADP reductase / 0.692
2dji FADPyruvate oxidase / 0.691
4jdr FADDihydrolipoyl dehydrogenase 1.8.1.4 0.691
1ty9 FMNPhenazine biosynthesis protein PhzG 1.4 0.689
1umk FADNADH-cytochrome b5 reductase 3 1.6.2.2 0.688
2v1a FMNNPH1-1 / 0.688
3d72 FADVivid PAS protein VVD / 0.688
4fk8 FADFerredoxin--NADP reductase / 0.687
4wqm FADToluene-4-monooxygenase electron transfer component 1.18.1.3 0.686
2c3c FAD2-oxopropyl-CoM reductase, carboxylating 1.8.1.5 0.684
2ed4 FAD4-hydroxyphenylacetate 3-monooxygenase reductase component 1.5.1.36 0.684
2pia FMNPhthalate dioxygenase reductase / 0.684
2vnj FADNADPH:ferredoxin reductase / 0.683
1icv FMNOxygen-insensitive NAD(P)H nitroreductase / 0.682
3in6 FMNUncharacterized protein / 0.682
3pxv FMNNitroreductase / 0.682
4eeu FMNPhototropin-2 2.7.11.1 0.681
4hj3 FMNLOV protein / 0.681
3rh7 FMNUncharacterized protein / 0.680
2ohi FMNType A flavoprotein FprA 1 0.678
2bgi FADNADPH:ferredoxin reductase / 0.677
2z6c FMNPhototropin-1 2.7.11.1 0.677
4k1x FADNADPH:ferredoxin reductase / 0.677
2z6d FMNPhototropin-2 2.7.11.1 0.676
4mo2 FADUDP-galactopyranose mutase / 0.676
2gpj FADSiderophore-interacting protein / 0.675
4ttc FMNIodotyrosine deiodinase 1 / 0.675
2bf4 FADNADPH--cytochrome P450 reductase / 0.674
3pl8 FADPyranose 2-oxidase / 0.674
1fnb FADFerredoxin--NADP reductase, chloroplastic 1.18.1.2 0.671
5fs6 FADApoptosis-inducing factor 1, mitochondrial 1.1.1 0.671
1qh0 FADFerredoxin--NADP reductase 1.18.1.2 0.670
2zzc FADThioredoxin reductase 1, cytoplasmic 1.8.1.9 0.670
4k5r FADOxygenase / 0.670
1flm FMNFMN-binding protein / 0.669
1jeh FADDihydrolipoyl dehydrogenase, mitochondrial 1.8.1.4 0.669
3klb FMNUncharacterized protein / 0.669
1ep3 FADDihydroorotate dehydrogenase B (NAD(+)), electron transfer subunit / 0.667
1fdr FADFerredoxin--NADP reductase 1.18.1.2 0.667
1gvh FADFlavohemoprotein / 0.667
1p4m FMNRiboflavin kinase 2.7.1.26 0.667
1wlk FMNFMN-binding protein / 0.667
2vnh FADNADPH:ferredoxin reductase / 0.667
5er0 FADUncharacterized NAD(FAD)-dependent dehydrogenase / 0.667
1j9z FADNADPH--cytochrome P450 reductase / 0.666
2ou5 FMNPyridoxamine 5'-phosphate oxidase-related FMN-binding protein / 0.666
3a20 FMNFMN-binding protein / 0.666
3a6r FMNFMN-binding protein / 0.666
3dk9 FADGlutathione reductase, mitochondrial 1.8.1.7 0.666
3utg FDAUDP-galactopyranose mutase / 0.666
4l82 FMNUncharacterized protein / 0.666
4yl2 FMNLactate oxidase / 0.666
1ju2 FAD(R)-mandelonitrile lyase 2 4.1.2.10 0.665
3jqr FADFerredoxin--NADP reductase, apicoplast / 0.665
4af7 FADFerredoxin--NADP reductase, leaf isozyme, chloroplastic 1.18.1.2 0.665
1tll FADNitric oxide synthase, brain 1.14.13.39 0.664
2eix FADNADH-cytochrome b5 reductase / 0.664
3a3g DLZLumazine protein / 0.664
3gdp FAD(R)-mandelonitrile lyase 2 4.1.2.10 0.664
4xwz FADFructosyl amine:oxygen oxidoreductase / 0.664
4ylf FADDihydroorotate dehydrogenase B (NAD(+)), electron transfer subunit homolog / 0.663
2gmh FADElectron transfer flavoprotein-ubiquinone oxidoreductase, mitochondrial 1.5.5.1 0.662
2igo FADPyranose 2-oxidase / 0.662
2wba FADTrypanothione reductase 1.8.1.12 0.661
2qdx FADFerredoxin--NADP+ reductase / 0.660
1sbz FMNProbable UbiX-like flavin prenyltransferase / 0.659
4rhe FMNFlavin prenyltransferase UbiX / 0.659
5ez7 FADProbable FAD-dependent oxidoreductase PA4991 / 0.659
1v5e FADPyruvate oxidase / 0.658
2eq6 FADDihydrolipoyl dehydrogenase / 0.658
4iv6 FDAIsovaleryl-CoA dehydrogenase / 0.658
5g3s FDAFlavin-dependent L-tryptophan oxidase VioA / 0.658
1qgy FADFerredoxin--NADP reductase 1.18.1.2 0.656
2bn4 FADNADPH--cytochrome P450 reductase / 0.656
5a8a FMNRiboflavin biosynthesis protein RibF 2.7.1.26 0.656
2r6h FADNa(+)-translocating NADH-quinone reductase subunit F / 0.655
4wx1 FDAUDP-galactopyranose mutase / 0.655
1e63 FADFerredoxin--NADP reductase 1.18.1.2 0.654
1ps9 FAD2,4-dienoyl-CoA reductase 1.3.1.34 0.654
2w0h FADTrypanothione reductase / 0.654
3vy5 FMNFMN-binding protein / 0.653
4c43 FADFerredoxin--NADP reductase 1.18.1.2 0.653
5fs9 FADApoptosis-inducing factor 1, mitochondrial 1.1.1 0.653
1wli FMNFMN-binding protein / 0.652
2iml FMNUncharacterized protein / 0.652
3up5 FAD2-oxo-Delta(3)-4,5,5-trimethylcyclopentenylacetyl-CoA monooxygenase 1.14.13.160 0.652
1mok FAD2-oxopropyl-CoM reductase, carboxylating 1.8.1.5 0.651
1n07 FMNRiboflavin kinase 2.7.1.26 0.651
3a6q FMNFMN-binding protein / 0.651
3gag FMNPutative NADH dehydrogenase NAD(P)H nitroreductase / 0.651
3lxd FADFAD-dependent pyridine nucleotide-disulfide oxidoreductase / 0.651
3vy2 FMNFMN-binding protein / 0.651
4m52 FADDihydrolipoyl dehydrogenase 1.8.1.4 0.651
1krh FADBenzoate 1,2-dioxygenase electron transfer component 1.18.1.3 0.650
3b05 FNRIsopentenyl-diphosphate delta-isomerase / 0.650
3r5y F42Uncharacterized protein / 0.650
3r7k FDAProbable acyl CoA dehydrogenase / 0.650
3vkj FNRIsopentenyl-diphosphate delta-isomerase / 0.650
3w5u FADFerredoxin / 0.650
5g3t FDAFlavin-dependent L-tryptophan oxidase VioA / 0.650