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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Cavity similarities measured by Shaper
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Cavities are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299

Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3s2pPMUCyclin-dependent kinase 22.7.11.22

Complex with similar cavities

PDB ID HET Uniprot Name EC Number Cavity
Similarity		 Align
3s2pPMUCyclin-dependent kinase 22.7.11.221.000
1ckpPVBCyclin-dependent kinase 22.7.11.220.587
1oitHDTCyclin-dependent kinase 22.7.11.220.584
4fkpLS5Cyclin-dependent kinase 22.7.11.220.576
2r64740Cyclin-dependent kinase 22.7.11.220.573
4fki09KCyclin-dependent kinase 22.7.11.220.564
1w0xOLOCyclin-dependent kinase 22.7.11.220.561
4ek610KCyclin-dependent kinase 22.7.11.220.558
4fkr45KCyclin-dependent kinase 22.7.11.220.554
2vtiLZ3Cyclin-dependent kinase 22.7.11.220.545
3qxoX65Cyclin-dependent kinase 22.7.11.220.543
2btrU73Cyclin-dependent kinase 22.7.11.220.542
1ke5LS1Cyclin-dependent kinase 22.7.11.220.541
2btsU32Cyclin-dependent kinase 22.7.11.220.541
2vtpLZ9Cyclin-dependent kinase 22.7.11.220.540
2a0cCK9Cyclin-dependent kinase 22.7.11.220.536
2c6o4SPCyclin-dependent kinase 22.7.11.220.535
3r1yX76Cyclin-dependent kinase 22.7.11.220.532
4fkt48KCyclin-dependent kinase 22.7.11.220.531
4fkq42KCyclin-dependent kinase 22.7.11.220.524
3lfsA07Cyclin-dependent kinase 22.7.11.220.523
3r7vZ02Cyclin-dependent kinase 22.7.11.220.523
4fkg4CKCyclin-dependent kinase 22.7.11.220.519
1pxmCK5Cyclin-dependent kinase 22.7.11.220.517
3rm719ZCyclin-dependent kinase 22.7.11.220.516
3qzgX67Cyclin-dependent kinase 22.7.11.220.515
3r7yZ04Cyclin-dependent kinase 22.7.11.220.515
3qtzX42Cyclin-dependent kinase 22.7.11.220.513
4bgh3I6Cyclin-dependent kinase 22.7.11.220.513
3lfnA27Cyclin-dependent kinase 22.7.11.220.512
1ke7LS3Cyclin-dependent kinase 22.7.11.220.510
3roy22ZCyclin-dependent kinase 22.7.11.220.508
2r3iSCFCyclin-dependent kinase 22.7.11.220.506
2vthLZ2Cyclin-dependent kinase 22.7.11.220.502
3qu0X40Cyclin-dependent kinase 22.7.11.220.502
3r7uX96Cyclin-dependent kinase 22.7.11.220.501
4ek816KCyclin-dependent kinase 22.7.11.220.500
4fkv61KCyclin-dependent kinase 22.7.11.220.499
1gih1PUCyclin-dependent kinase 22.7.11.220.498
1h0w207Cyclin-dependent kinase 22.7.11.220.498
1ke9LS5Cyclin-dependent kinase 22.7.11.220.498
1pxoCK7Cyclin-dependent kinase 22.7.11.220.498
2duv371Cyclin-dependent kinase 22.7.11.220.497
2uzoC62Cyclin-dependent kinase 22.7.11.220.497
3lfqA28Cyclin-dependent kinase 22.7.11.220.497
3iggEFQCyclin-dependent kinase 22.7.11.220.494
3r83Z14Cyclin-dependent kinase 22.7.11.220.493
1oirHDYCyclin-dependent kinase 22.7.11.220.492
1di8DTQCyclin-dependent kinase 22.7.11.220.491
2w06FRVCyclin-dependent kinase 22.7.11.220.491
3r1sX73Cyclin-dependent kinase 22.7.11.220.491
4lyn1YGCyclin-dependent kinase 22.7.11.220.490
1ke6LS2Cyclin-dependent kinase 22.7.11.220.488
2uznC96Cyclin-dependent kinase 22.7.11.220.488
2vtjLZ4Cyclin-dependent kinase 22.7.11.220.488
2r3lSCWCyclin-dependent kinase 22.7.11.220.487
3r73X87Cyclin-dependent kinase 22.7.11.220.487
1v1k3FPCyclin-dependent kinase 22.7.11.220.486
3sqq99ZCyclin-dependent kinase 22.7.11.220.486
2vtsLZCCyclin-dependent kinase 22.7.11.220.485
3qqkX02Cyclin-dependent kinase 22.7.11.220.485
3r71X86Cyclin-dependent kinase 22.7.11.220.485
1ykr628Cyclin-dependent kinase 22.7.11.220.484
3sw418KCyclin-dependent kinase 22.7.11.220.484
1fvt106Cyclin-dependent kinase 22.7.11.220.483
2a4lRRCCyclin-dependent kinase 22.7.11.220.483
3r8lZ30Cyclin-dependent kinase 22.7.11.220.483
3qwkX62Cyclin-dependent kinase 22.7.11.220.482
3ezvEZVCyclin-dependent kinase 22.7.11.220.481
3qwjX6ACyclin-dependent kinase 22.7.11.220.480
3rni21ZCyclin-dependent kinase 22.7.11.220.480
4ez30S0Cyclin-dependent kinase 22.7.11.220.480
3qqfX07Cyclin-dependent kinase 22.7.11.220.479
3qqlX03Cyclin-dependent kinase 22.7.11.220.478
3raiX85Cyclin-dependent kinase 22.7.11.220.477
4kd11QKCyclin-dependent kinase 22.7.11.220.477
1dm2HMDCyclin-dependent kinase 22.7.11.220.475
3qtuX44Cyclin-dependent kinase 22.7.11.220.474
3rpv26ZCyclin-dependent kinase 22.7.11.220.474
1g5sI17Cyclin-dependent kinase 22.7.11.220.473
2w1hL0FCyclin-dependent kinase 22.7.11.220.472
3rk909ZCyclin-dependent kinase 22.7.11.220.472
3fz1B98Cyclin-dependent kinase 22.7.11.220.470
2r3p3SCCyclin-dependent kinase 22.7.11.220.469
3ral04ZCyclin-dependent kinase 22.7.11.220.469
1p2a5BNCyclin-dependent kinase 22.7.11.220.468
1w8cN69Cyclin-dependent kinase 22.7.11.220.468
3rjc06ZCyclin-dependent kinase 22.7.11.220.468
1urwI1PCyclin-dependent kinase 22.7.11.220.467
4fklCK2Cyclin-dependent kinase 22.7.11.220.467
1pxlCK4Cyclin-dependent kinase 22.7.11.220.466
2c6kDT2Cyclin-dependent kinase 22.7.11.220.466
4fko20KCyclin-dependent kinase 22.7.11.220.466
4fx360KCyclin-dependent kinase 22.7.11.220.466
3ti1B49Cyclin-dependent kinase 22.7.11.220.464
3wblPDYCyclin-dependent kinase 22.7.11.220.464
1unlRRCCyclin-dependent-like kinase 52.7.11.10.463
2wpa889Cyclin-dependent kinase 22.7.11.220.463
1vyzN5BCyclin-dependent kinase 22.7.11.220.462
4bcmT7ZCyclin-dependent kinase 22.7.11.220.462
2w17I19Cyclin-dependent kinase 22.7.11.220.461
3qxpX64Cyclin-dependent kinase 22.7.11.220.461
3r28XA0Cyclin-dependent kinase 22.7.11.220.461
2b53D23Cyclin-dependent kinase 22.7.11.220.460
4acm7YGCyclin-dependent kinase 22.7.11.220.460
3r6xX84Cyclin-dependent kinase 22.7.11.220.459
3s1h56ZCyclin-dependent kinase 22.7.11.220.459
4fkj11KCyclin-dependent kinase 22.7.11.220.459
1vyw292Cyclin-dependent kinase 22.7.11.220.458
2exmZIPCyclin-dependent kinase 22.7.11.220.458
2r3o2SCCyclin-dependent kinase 22.7.11.220.458
3ig7EFPCyclin-dependent kinase 22.7.11.220.458
3rk708ZCyclin-dependent kinase 22.7.11.220.458
1y91CT9Cyclin-dependent kinase 22.7.11.220.457
2r3mSCXCyclin-dependent kinase 22.7.11.220.457
3rkb12ZCyclin-dependent kinase 22.7.11.220.457
2b52D42Cyclin-dependent kinase 22.7.11.220.456
2vtoLZ8Cyclin-dependent kinase 22.7.11.220.456
3pj8404Cyclin-dependent kinase 22.7.11.220.456
3r8vZ62Cyclin-dependent kinase 22.7.11.220.456
1pyePM1Cyclin-dependent kinase 22.7.11.220.455
3rpo24ZCyclin-dependent kinase 22.7.11.220.455
3qzhX69Cyclin-dependent kinase 22.7.11.220.454
3rmf20ZCyclin-dependent kinase 22.7.11.220.453
1aq1STUCyclin-dependent kinase 22.7.11.220.452
2bhhRYUCyclin-dependent kinase 22.7.11.220.452
1oiqHDUCyclin-dependent kinase 22.7.11.220.451
2c6iDT1Cyclin-dependent kinase 22.7.11.220.451
2r3r6SCCyclin-dependent kinase 22.7.11.220.451
3r1qX75Cyclin-dependent kinase 22.7.11.220.451
1b39ATPCyclin-dependent kinase 22.7.11.220.450
1h1s4SPCyclin-dependent kinase 22.7.11.220.450
3ddpRC8Cyclin-dependent kinase 22.7.11.220.450
3r7eX88Cyclin-dependent kinase 22.7.11.220.450
3sw719KCyclin-dependent kinase 22.7.11.220.450
1b38ATPCyclin-dependent kinase 22.7.11.220.449
1oguST8Cyclin-dependent kinase 22.7.11.220.449
1pxpCK8Cyclin-dependent kinase 22.7.11.220.448
1gii1PUCyclin-dependent kinase 22.7.11.220.446
2r3kSCQCyclin-dependent kinase 22.7.11.220.446
2b55D31Cyclin-dependent kinase 22.7.11.220.445
2wxvWXVCyclin-dependent kinase 22.7.11.220.445
3rm618ZCyclin-dependent kinase 22.7.11.220.445
3rpy27ZCyclin-dependent kinase 22.7.11.220.444
2vv9IM9Cyclin-dependent kinase 22.7.11.220.443
3r8pZ46Cyclin-dependent kinase 22.7.11.220.443
4fks46KCyclin-dependent kinase 22.7.11.220.443
3r9oZ71Cyclin-dependent kinase 22.7.11.220.442
4eor4SPCyclin-dependent kinase 22.7.11.220.442
1ke8LS4Cyclin-dependent kinase 22.7.11.220.440
2iw94SPCyclin-dependent kinase 22.7.11.220.440
3rahO1ZCyclin-dependent kinase 22.7.11.220.440