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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Cavity similarities measured by Shaper
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Cavities are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299

Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3rk909ZCyclin-dependent kinase 22.7.11.22

Complex with similar cavities

PDB ID HET Uniprot Name EC Number Cavity
Similarity		 Align
3rk909ZCyclin-dependent kinase 22.7.11.221.000
3qu0X40Cyclin-dependent kinase 22.7.11.220.643
3qwjX6ACyclin-dependent kinase 22.7.11.220.642
3qtxX43Cyclin-dependent kinase 22.7.11.220.641
3rpv26ZCyclin-dependent kinase 22.7.11.220.618
3rkb12ZCyclin-dependent kinase 22.7.11.220.605
3rk708ZCyclin-dependent kinase 22.7.11.220.587
3qzgX67Cyclin-dependent kinase 22.7.11.220.582
1ykr628Cyclin-dependent kinase 22.7.11.220.564
3r9hZ67Cyclin-dependent kinase 22.7.11.220.563
3qtuX44Cyclin-dependent kinase 22.7.11.220.562
3rm618ZCyclin-dependent kinase 22.7.11.220.560
3rjc06ZCyclin-dependent kinase 22.7.11.220.559
3r8vZ62Cyclin-dependent kinase 22.7.11.220.557
3rni21ZCyclin-dependent kinase 22.7.11.220.557
3rpo24ZCyclin-dependent kinase 22.7.11.220.557
2b52D42Cyclin-dependent kinase 22.7.11.220.556
1pxmCK5Cyclin-dependent kinase 22.7.11.220.555
3iggEFQCyclin-dependent kinase 22.7.11.220.550
2btrU73Cyclin-dependent kinase 22.7.11.220.546
3r1yX76Cyclin-dependent kinase 22.7.11.220.546
1pxlCK4Cyclin-dependent kinase 22.7.11.220.543
2a0cCK9Cyclin-dependent kinase 22.7.11.220.542
3lfnA27Cyclin-dependent kinase 22.7.11.220.542
3qtqX35Cyclin-dependent kinase 22.7.11.220.541
3r73X87Cyclin-dependent kinase 22.7.11.220.535
3rak03ZCyclin-dependent kinase 22.7.11.220.535
4ek610KCyclin-dependent kinase 22.7.11.220.534
4ek816KCyclin-dependent kinase 22.7.11.220.534
2xmyCDKCyclin-dependent kinase 22.7.11.220.532
3r71X86Cyclin-dependent kinase 22.7.11.220.527
3rmf20ZCyclin-dependent kinase 22.7.11.220.525
1ke5LS1Cyclin-dependent kinase 22.7.11.220.524
1y91CT9Cyclin-dependent kinase 22.7.11.220.523
3qqkX02Cyclin-dependent kinase 22.7.11.220.523
1w0xOLOCyclin-dependent kinase 22.7.11.220.521
4ez30S0Cyclin-dependent kinase 22.7.11.220.521
3sqq99ZCyclin-dependent kinase 22.7.11.220.520
1g5sI17Cyclin-dependent kinase 22.7.11.220.519
3qtrX36Cyclin-dependent kinase 22.7.11.220.518
2c6o4SPCyclin-dependent kinase 22.7.11.220.517
4fkg4CKCyclin-dependent kinase 22.7.11.220.515
3qxoX65Cyclin-dependent kinase 22.7.11.220.514
3r83Z14Cyclin-dependent kinase 22.7.11.220.513
1ckpPVBCyclin-dependent kinase 22.7.11.220.511
1gih1PUCyclin-dependent kinase 22.7.11.220.511
3r7yZ04Cyclin-dependent kinase 22.7.11.220.510
4fki09KCyclin-dependent kinase 22.7.11.220.510
3py0SU9Cyclin-dependent kinase 22.7.11.220.509
3s1h56ZCyclin-dependent kinase 22.7.11.220.508
3rm719ZCyclin-dependent kinase 22.7.11.220.507
4fkpLS5Cyclin-dependent kinase 22.7.11.220.507
4lyn1YGCyclin-dependent kinase 22.7.11.220.507
4fkj11KCyclin-dependent kinase 22.7.11.220.506
1pxoCK7Cyclin-dependent kinase 22.7.11.220.505
1v1k3FPCyclin-dependent kinase 22.7.11.220.505
3s2pPMUCyclin-dependent kinase 22.7.11.220.505
4fkw62KCyclin-dependent kinase 22.7.11.220.505
1p2a5BNCyclin-dependent kinase 22.7.11.220.503
3s0o50ZCyclin-dependent kinase 22.7.11.220.503
4fkq42KCyclin-dependent kinase 22.7.11.220.503
4acm7YGCyclin-dependent kinase 22.7.11.220.502
2btsU32Cyclin-dependent kinase 22.7.11.220.500
1oitHDTCyclin-dependent kinase 22.7.11.220.498
2a4lRRCCyclin-dependent kinase 22.7.11.220.497
2vtjLZ4Cyclin-dependent kinase 22.7.11.220.497
2w06FRVCyclin-dependent kinase 22.7.11.220.497
3r28XA0Cyclin-dependent kinase 22.7.11.220.497
4fkv61KCyclin-dependent kinase 22.7.11.220.496
2r3lSCWCyclin-dependent kinase 22.7.11.220.494
2vtoLZ8Cyclin-dependent kinase 22.7.11.220.493
3ig7EFPCyclin-dependent kinase 22.7.11.220.493
2uznC96Cyclin-dependent kinase 22.7.11.220.492
2vtsLZCCyclin-dependent kinase 22.7.11.220.492
2duv371Cyclin-dependent kinase 22.7.11.220.490
4kd11QKCyclin-dependent kinase 22.7.11.220.490
4fks46KCyclin-dependent kinase 22.7.11.220.486
2w1hL0FCyclin-dependent kinase 22.7.11.220.485
3ezvEZVCyclin-dependent kinase 22.7.11.220.485
4bgh3I6Cyclin-dependent kinase 22.7.11.220.485
3qqfX07Cyclin-dependent kinase 22.7.11.220.484
4fkt48KCyclin-dependent kinase 22.7.11.220.483
2vtpLZ9Cyclin-dependent kinase 22.7.11.220.481
3qqlX03Cyclin-dependent kinase 22.7.11.220.481
3unk0BYCyclin-dependent kinase 22.7.11.220.481
3wblPDYCyclin-dependent kinase 22.7.11.220.481
2vv9IM9Cyclin-dependent kinase 22.7.11.220.480
1dm2HMDCyclin-dependent kinase 22.7.11.220.479
1urwI1PCyclin-dependent kinase 22.7.11.220.479
2vtiLZ3Cyclin-dependent kinase 22.7.11.220.479
3roy22ZCyclin-dependent kinase 22.7.11.220.479
4fkr45KCyclin-dependent kinase 22.7.11.220.479
3r1qX75Cyclin-dependent kinase 22.7.11.220.478
3sw418KCyclin-dependent kinase 22.7.11.220.478
2r3kSCQCyclin-dependent kinase 22.7.11.220.477
2vtnLZ7Cyclin-dependent kinase 22.7.11.220.477
3pj8404Cyclin-dependent kinase 22.7.11.220.477
3r1sX73Cyclin-dependent kinase 22.7.11.220.477
1h0w207Cyclin-dependent kinase 22.7.11.220.476
1pyePM1Cyclin-dependent kinase 22.7.11.220.476
2vthLZ2Cyclin-dependent kinase 22.7.11.220.476
3qqhX0ACyclin-dependent kinase 22.7.11.220.476
3qwkX62Cyclin-dependent kinase 22.7.11.220.476
3r8pZ46Cyclin-dependent kinase 22.7.11.220.476
3rk507ZCyclin-dependent kinase 22.7.11.220.476
1h1r6CPCyclin-dependent kinase 22.7.11.220.475
1ke9LS5Cyclin-dependent kinase 22.7.11.220.474
2w17I19Cyclin-dependent kinase 22.7.11.220.474
1vyw292Cyclin-dependent kinase 22.7.11.220.473
2r64740Cyclin-dependent kinase 22.7.11.220.473
2uzoC62Cyclin-dependent kinase 22.7.11.220.473
2vttLZDCyclin-dependent kinase 22.7.11.220.473
1b38ATPCyclin-dependent kinase 22.7.11.220.472
3ral04ZCyclin-dependent kinase 22.7.11.220.472
2b55D31Cyclin-dependent kinase 22.7.11.220.471
1ke7LS3Cyclin-dependent kinase 22.7.11.220.470
3qruX19Cyclin-dependent kinase 22.7.11.220.470
3qtzX42Cyclin-dependent kinase 22.7.11.220.469
3ql8X01Cyclin-dependent kinase 22.7.11.220.468
1ke6LS2Cyclin-dependent kinase 22.7.11.220.467
1oguST8Cyclin-dependent kinase 22.7.11.220.467
1w8cN69Cyclin-dependent kinase 22.7.11.220.467
1e1xNW1Cyclin-dependent kinase 22.7.11.220.466
4eor4SPCyclin-dependent kinase 22.7.11.220.466
2bhhRYUCyclin-dependent kinase 22.7.11.220.464
1h1s4SPCyclin-dependent kinase 22.7.11.220.463
3ddqRRCCyclin-dependent kinase 22.7.11.220.463
4fx360KCyclin-dependent kinase 22.7.11.220.463
4eon1ROCyclin-dependent kinase 22.7.11.220.462
2ds11CDCyclin-dependent kinase 22.7.11.220.461
1oirHDYCyclin-dependent kinase 22.7.11.220.460
3ddpRC8Cyclin-dependent kinase 22.7.11.220.460
3r9oZ71Cyclin-dependent kinase 22.7.11.220.460
3ezrEZRCyclin-dependent kinase 22.7.11.220.459
3r6xX84Cyclin-dependent kinase 22.7.11.220.459
1gii1PUCyclin-dependent kinase 22.7.11.220.458
2b53D23Cyclin-dependent kinase 22.7.11.220.458
3r8lZ30Cyclin-dependent kinase 22.7.11.220.458
3r7uX96Cyclin-dependent kinase 22.7.11.220.457
3raiX85Cyclin-dependent kinase 22.7.11.220.457
1di8DTQCyclin-dependent kinase 22.7.11.220.456
3ti1B49Cyclin-dependent kinase 22.7.11.220.456
1ke8LS4Cyclin-dependent kinase 22.7.11.220.455
1pxkCK3Cyclin-dependent kinase 22.7.11.220.455
1aq1STUCyclin-dependent kinase 22.7.11.220.454
1vyzN5BCyclin-dependent kinase 22.7.11.220.454
3r7eX88Cyclin-dependent kinase 22.7.11.220.454
2iw94SPCyclin-dependent kinase 22.7.11.220.452
5aniES4Cyclin-dependent kinase 22.7.11.220.452
1oiuN76Cyclin-dependent kinase 22.7.11.220.451
2c6iDT1Cyclin-dependent kinase 22.7.11.220.451
3sw719KCyclin-dependent kinase 22.7.11.220.451
1fvv107Cyclin-dependent kinase 22.7.11.220.450
2c6kDT2Cyclin-dependent kinase 22.7.11.220.450
2r3p3SCCyclin-dependent kinase 22.7.11.220.449
1hckATPCyclin-dependent kinase 22.7.11.220.448
1y8yCT7Cyclin-dependent kinase 22.7.11.220.446
3qziX72Cyclin-dependent kinase 22.7.11.220.446
1fvt106Cyclin-dependent kinase 22.7.11.220.445
3rahO1ZCyclin-dependent kinase 22.7.11.220.445
1h1pCMGCyclin-dependent kinase 22.7.11.220.444
4fko20KCyclin-dependent kinase 22.7.11.220.444
4bcpT3CCyclin-dependent kinase 22.7.11.220.442
2r3jSCJCyclin-dependent kinase 22.7.11.220.441
3fz1B98Cyclin-dependent kinase 22.7.11.220.441
2exmZIPCyclin-dependent kinase 22.7.11.220.440