2.000 Å
X-ray
2006-06-17
Name: | Cyclin-dependent kinase 2 |
---|---|
ID: | CDK2_HUMAN |
AC: | P24941 |
Organism: | Homo sapiens |
Reign: | Eukaryota |
TaxID: | 9606 |
EC Number: | 2.7.11.22 |
Chain Name: | Percentage of Residues within binding site |
---|---|
A | 100 % |
B-Factor: | 36.660 |
---|---|
Number of residues: | 30 |
Including | |
Standard Amino Acids: | 30 |
Non Standard Amino Acids: | 0 |
Water Molecules: | 0 |
Cofactors: | |
Metals: |
Ligandability | Volume (Å3) |
---|---|
0.758 | 661.500 |
% Hydrophobic | % Polar |
---|---|
43.88 | 56.12 |
According to VolSite |
HET Code: | 1CD |
---|---|
Formula: | C22H22N5O3 |
Molecular weight: | 404.442 g/mol |
DrugBank ID: | DB06888 |
Buried Surface Area: | 68.66 % |
Polar Surface area: | 87.47 Å2 |
Number of | |
---|---|
H-Bond Acceptors: | 5 |
H-Bond Donors: | 3 |
Rings: | 6 |
Aromatic rings: | 2 |
Anionic atoms: | 0 |
Cationic atoms: | 1 |
Rule of Five Violation: | 0 |
Rotatable Bonds: | 0 |
X | Y | Z |
---|---|---|
-9.05027 | 10.338 | 13.4244 |
Represent the protein/ligand binding mode, centered on the ligand
Dashed lines represents hydrogen bonds and metal interactions
Green residue labels for amino acids with hydrophobic contacts (green lines) to the ligand
Ligand | Protein | Interaction | |||
---|---|---|---|---|---|
Atom | Atom | Residue | Distance (Å) | Angle (°) | Type |
C7 | CD1 | ILE- 10 | 3.99 | 0 | Hydrophobic |
O29 | NZ | LYS- 33 | 3.05 | 164.04 | H-Bond (Protein Donor) |
N14 | O | VAL- 83 | 2.71 | 135.5 | H-Bond (Ligand Donor) |
O19 | N | VAL- 83 | 2.91 | 172.79 | H-Bond (Protein Donor) |
C1 | CB | ASN- 132 | 4.35 | 0 | Hydrophobic |
C1 | CD2 | LEU- 134 | 3.97 | 0 | Hydrophobic |
C7 | CD2 | LEU- 134 | 4.2 | 0 | Hydrophobic |
C1 | CB | ALA- 144 | 4.24 | 0 | Hydrophobic |