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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Binding site similarity measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Binding Sites are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
Binding Sites are considered as similar when the similarity value is greater than 0.44

Reference Protein Data Bank Entry :
PDB IDHETUniprot NameEC Number
3bqdDAYGlucocorticoid receptor

Complex with similar binding sites

PDB ID HET Uniprot Name EC Number Binding Site
Similarity
Align
3bqdDAYGlucocorticoid receptor/1.000
1m2zDEXGlucocorticoid receptor/0.555
1ya3STRMineralocorticoid receptor/0.537
2ovmAS0Progesterone receptor/0.537
1p93DEXGlucocorticoid receptor/0.527
3mnpDEXGlucocorticoid receptor/0.522
4udcDEXGlucocorticoid receptor/0.519
2abi1CAMineralocorticoid receptor/0.517
2po7CHDFerrochelatase, mitochondrial4.99.1.10.508
3mneDEXGlucocorticoid receptor/0.508
4lsjLSJGlucocorticoid receptor/0.504
1y60H4M5,6,7,8-tetrahydromethanopterin hydro-lyase4.2.1.1470.501
2ab2SNLMineralocorticoid receptor/0.498
3mnoDEXGlucocorticoid receptor/0.498
1qiqACCIsopenicillin N synthase1.21.3.10.497
3zrbORCProgesterone receptor/0.497
4p6wMOFGlucocorticoid receptor/0.496
2aa71CAMineralocorticoid receptor/0.493
3zrbOR8Progesterone receptor/0.492
4udaDEXMineralocorticoid receptor/0.492
2oaxSNLMineralocorticoid receptor/0.488
2ovhAS0Progesterone receptor/0.488
4a2jAS0Progesterone receptor/0.487
2aaxPDNMineralocorticoid receptor/0.486
1hb1OCVIsopenicillin N synthase1.21.3.10.485
3d90NOGProgesterone receptor/0.485
1nhz486Glucocorticoid receptor/0.484
3zr7OR8Progesterone receptor/0.484
1qjfACSIsopenicillin N synthase1.21.3.10.483
2aa6STRMineralocorticoid receptor/0.483
2vcmM11Isopenicillin N synthase1.21.3.10.483
2wo7ASVIsopenicillin N synthase1.21.3.10.482
4u9yCOAAlpha-tubulin N-acetyltransferase 1/0.482
3vhuSNLMineralocorticoid receptor/0.481
4ag7COAGlucosamine 6-phosphate N-acetyltransferase/0.480
1blzACVIsopenicillin N synthase1.21.3.10.479
1w06W05Isopenicillin N synthase1.21.3.10.479
2a3iC0RMineralocorticoid receptor/0.479
2aa5STRMineralocorticoid receptor/0.479
2jb4A14Isopenicillin N synthase1.21.3.10.479
2y6fM9FIsopenicillin N synthase1.21.3.10.479
3zkyWT4Isopenicillin N synthase1.21.3.10.479
5uviZMAAdenosine receptor A2a/0.479
2vbpVB1Isopenicillin N synthase1.21.3.10.478
4if5ACOAlpha-tubulin N-acetyltransferase 1/0.478
2qd4CHDFerrochelatase, mitochondrial4.99.1.10.477
3c0g3AMPeripheral plasma membrane protein CASK2.7.11.10.477
3l0lHC3Nuclear receptor ROR-gamma/0.477
2w8y486Progesterone receptor/0.476
4p6xHCYGlucocorticoid receptor/0.476
1bk0ACVIsopenicillin N synthase1.21.3.10.475
1obnASVIsopenicillin N synthase1.21.3.10.475
2vbdV10Isopenicillin N synthase1.21.3.10.475
4nky3QZSteroid 17-alpha-hydroxylase/17,20 lyase/0.475
1iyzNDPProbable quinone oxidoreductase/0.473
1pkfEPDEpothilone C/D epoxidase1.140.473
2hrcCHDFerrochelatase, mitochondrial4.99.1.10.473
2iviACWIsopenicillin N synthase1.21.3.10.472
3ibdCPZCytochrome P450 2B61.14.130.472
3vweCOAAlpha-tubulin N-acetyltransferase 1/0.472
2w8yNDRProgesterone receptor/0.471
3zoiM2WIsopenicillin N synthase1.21.3.10.471
4g1z0VPVitamin D3 receptor A/0.471
4u9zCOAAlpha-tubulin N-acetyltransferase 1/0.471
2fs4PZ1Renin3.4.23.150.470
2w9sTOPDihydrofolate reductase type 1 from Tn40031.5.1.30.469
4qe6JN3Bile acid receptor/0.469
1e3kR18Progesterone receptor/0.468
1uzwCDHIsopenicillin N synthase1.21.3.10.468
1y5rC0RCorticosteroid 11-beta-dehydrogenase isozyme 11.1.1.1460.468
3falREARetinoic acid receptor RXR-alpha/0.468
3l6jZ90Alr2278 protein/0.468
3tk3CPZCytochrome P450 2B41.14.14.10.468
5hbrCOAAcyl-CoA synthetase (NDP forming)/0.468
3gyuDL7Nuclear hormone receptor of the steroid/thyroid hormone receptors superfamily/0.467
4bj9UHBTankyrase-22.4.2.300.466
4j6cSTRCytochrome P450 monooxygenase/0.466
4oztP1AEcdysone receptor, putative/0.466
4apuA2KProgesterone receptor/0.465
4ia1BIVVitamin D3 receptor A/0.465
4qi5FADCellobiose dehydrogenase/0.465
2wpxACOOrf14/0.464
4i8vBHFCytochrome P450 1A11.14.14.10.464
2pnjCHDFerrochelatase, mitochondrial4.99.1.10.463
4jbtASDCytochrome P450 monooxygenase/0.463
5bp9SAHPutative methyltransferase protein/0.463
1jutLYDThymidylate synthase/0.462
2dvlFADAcyl-CoA dehydrogenase/0.462
3kytHC2Nuclear receptor ROR-gamma/0.462
4dfrMTXDihydrofolate reductase1.5.1.30.462
4ia2BIVVitamin D3 receptor A/0.462
1n83CLRNuclear receptor ROR-alpha/0.461
2amb17HAndrogen receptor/0.461
2iutAGSDNA translocase FtsK/0.461
3bfb9ODPheromone-binding protein ASP1/0.461
3qm4PN0Cytochrome P450 2D6/0.461
3up0D7SaceDAF-12/0.461
4bb3KKAIsopenicillin N synthase1.21.3.10.461
4iah1DXAlr2278 protein/0.461
2hm9TRRDihydrofolate reductase1.5.1.30.460
2jfz003Glutamate racemase/0.460
2y05NAPProstaglandin reductase 1/0.460
3zraORBProgesterone receptor/0.460
4b5oACOAlpha-tubulin N-acetyltransferase 1/0.460
4nb6444Nuclear receptor ROR-gamma/0.460
4ruoBIVVitamin D3 receptor A/0.460
5kf2ACOPredicted acetyltransferase/0.460
1dz6CAMCamphor 5-monooxygenase1.14.15.10.459
1fmlRTLRetinol dehydratase/0.459
1nooCAHCamphor 5-monooxygenase1.14.15.10.459
1oynROLcAMP-specific 3',5'-cyclic phosphodiesterase 4D3.1.4.530.459
2bbqPFGThymidylate synthase/0.459
3ar5TG1Sarcoplasmic/endoplasmic reticulum calcium ATPase 13.6.3.80.459
4apuOR8Progesterone receptor/0.459
1dhjMTXDihydrofolate reductase1.5.1.30.458
1kzjCB3Thymidylate synthase/0.458
2aa2AS4Mineralocorticoid receptor/0.458
3is9AC7Gag-Pol polyprotein2.7.7.490.458
3up3XCAaceDAF-12/0.458
4ia7BIVVitamin D3 receptor A/0.458
5k2bZMAAdenosine receptor A2a/0.458
1hb3SCVIsopenicillin N synthase1.21.3.10.457
1oc1ASVIsopenicillin N synthase1.21.3.10.457
2hcdBIVVitamin D3 receptor A/0.457
2uxhQUEHTH-type transcriptional regulator TtgR/0.457
2uxpCLMHTH-type transcriptional regulator TtgR/0.457
3lu8IQXSerum albumin/0.457
4f4dCHDFerrochelatase, mitochondrial4.99.1.10.457
5eaiFADNAD(P)H dehydrogenase [quinone] 11.6.5.20.457
1crbRTLRetinol-binding protein 1/0.456
1draMTXDihydrofolate reductase1.5.1.30.456
1jolFFODihydrofolate reductase1.5.1.30.456
1lriCLRBeta-elicitin cryptogein/0.456
2bu9HFVIsopenicillin N synthase1.21.3.10.456
2jbsFMNp-hydroxyphenylacetate 3-hydroxylase, oxygenase component/0.456
3gytDL4Nuclear hormone receptor of the steroid/thyroid hormone receptors superfamily/0.456
3u8w09JMitogen-activated protein kinase 14/0.456
4gs4ACOAlpha-tubulin N-acetyltransferase 1/0.456
4h9506UDihydrofolate reductase1.5.1.30.456
4j6dTESCytochrome P450 monooxygenase/0.456
1y9r1CAMineralocorticoid receptor/0.455
2y60M8FIsopenicillin N synthase1.21.3.10.455
3jynNDPQuinone oxidoreductase/0.455
5k2aZMAAdenosine receptor A2a/0.455
1f4fTP3Thymidylate synthase/0.454
1p8dCO1Oxysterols receptor LXR-beta/0.454
1ppjANYCytochrome b/0.454
1rf7DHFDihydrofolate reductase1.5.1.30.454
1sqnNDRProgesterone receptor/0.454
1zdwFLVPrenyltransferase/0.454
4ia3BIVVitamin D3 receptor A/0.454
4ips1G4Mycocyclosin synthase1.14.21.90.454
5k2cZMAAdenosine receptor A2a/0.454
1g63FMNEpidermin decarboxylase4.1.10.453
1s0xC3SNuclear receptor ROR-alpha/0.453
2c29NAPDihydroflavonol 4-reductase/0.453
2he5NDPAldo-keto reductase family 1 member C211.1.10.453
2vzmNRBCytochrome P450 monooxygenase PikC/0.453
3anmSYD1-deoxy-D-xylulose 5-phosphate reductoisomerase1.1.1.2670.453
3slkNDPPolyketide synthase extender module 2/0.453
4anx534Phosphatidylinositol 4,5-bisphosphate 3-kinase catalytic subunit gamma isoform2.7.1.1530.453
1j4jACOAcetyltransferase2.3.10.452
2yozOVE2',3'-cyclic-nucleotide 3'-phosphodiesterase3.1.4.370.452
4elg52JDihydrofolate reductase/0.452
5dozNDPJamJ/0.452
1dz8CAMCamphor 5-monooxygenase1.14.15.10.451
1f4eTPRThymidylate synthase/0.451
1zucT98Progesterone receptor/0.451
2fhnBNIAvidin-related protein 4/5/0.451
3p2eSAH16S rRNA (adenine(1408)-N(1))-methyltransferase2.1.1.1800.451
3slz3TLPutative gag-pro-pol polyprotein/0.451
3vt7VDXVitamin D3 receptor/0.451
3w1wCHDFerrochelatase, mitochondrial4.99.1.10.451
4nieNBHNuclear receptor ROR-gamma/0.451
4r20AERCytochrome P450 family 17 polypeptide 2/0.451
1cdeGARPhosphoribosylglycinamide formyltransferase/0.450
1hvyD16Thymidylate synthase2.1.1.450.450
2j4z626Aurora kinase A2.7.11.10.450
2vn0TDZCytochrome P450 2C8/0.450
2w0bCMWLanosterol 14-alpha demethylase1.14.13.700.450
2x9dITCTetracycline repressor protein class D/0.450
3fl8RARDihydrofolate reductase/0.450
3ggfGVDSerine/threonine-protein kinase 26/0.450
3qly55VUncharacterized protein/0.450
3tea4CO4-hydroxybenzoyl-CoA thioesterase3.1.2.230.450
3u9fCLMChloramphenicol acetyltransferase2.3.1.280.450
4bbxLKFcAMP and cAMP-inhibited cGMP 3',5'-cyclic phosphodiesterase 10A3.1.4.170.450
4jqh1MFAlr2278 protein/0.450
4mvh2F5cAMP and cAMP-inhibited cGMP 3',5'-cyclic phosphodiesterase 10A3.1.4.170.450
4ri1ACOUDP-4-amino-4,6-dideoxy-N-acetyl-beta-L-altrosamine N-acetyltransferase2.3.1.2020.450
1bvrTHTEnoyl-[acyl-carrier-protein] reductase [NADH]1.3.1.90.449
1cc2FADCholesterol oxidase1.1.3.60.449
1gg5FADNAD(P)H dehydrogenase [quinone] 11.6.5.20.449
1wsvTHHAminomethyltransferase, mitochondrial/0.449
2hb7O1CVitamin D3 receptor/0.449
2j5xGSPADP-ribosylation factor 6/0.449
2qd3CHDFerrochelatase, mitochondrial4.99.1.10.449
3p3zP3ZPutative cytochrome P450/0.449
3v9v21LPeroxisome proliferator-activated receptor gamma/0.449
3vg9ZMAAdenosine receptor A2a/0.449
3zeiAWHO-acetylserine sulfhydrylase/0.449
5kghACOPredicted acetyltransferase/0.449
1eioGCHGastrotropin/0.448
1errRALEstrogen receptor/0.448
1xddAAYIntegrin alpha-L/0.448
1zeoC01Peroxisome proliferator-activated receptor gamma/0.448
2g274LGRenin3.4.23.150.448
2y98MIVMycinamicin IV hydroxylase/epoxidase/0.448
2zjwREFCasein kinase II subunit alpha2.7.11.10.448
3adaNADSubunit alpha of sarocosine oxidase/0.448
3gc8B45Mitogen-activated protein kinase 112.7.11.240.448
3kpzZNEVitamin D3 receptor/0.448
3p6nDSOCamphor 5-monooxygenase1.14.15.10.448
3t2kFADSulfide-quinone reductase/0.448
3vt9YI4Vitamin D3 receptor/0.448
4awiAQ2Mitogen-activated protein kinase 82.7.11.240.448
4ele31IDihydrofolate reductase/0.448
4l9kEHFSerum albumin/0.448
4r21STRCytochrome P450 family 17 polypeptide 2/0.448
5kf9ACOPredicted acetyltransferase/0.448
1fduESTEstradiol 17-beta-dehydrogenase 11.1.1.620.447
1h69FADNAD(P)H dehydrogenase [quinone] 11.6.5.20.447
1opbRETRetinol-binding protein 2/0.447
2b378PSEnoyl-[acyl-carrier-protein] reductase [NADH]1.3.1.90.447
2qbmCAMCamphor 5-monooxygenase1.14.15.10.447
3nx4NAPPutative oxidoreductase/0.447
3pe2E1BCasein kinase II subunit alpha2.7.11.10.447
5kf8ACOPredicted acetyltransferase/0.447
4z34ON7Lysophosphatidic acid receptor 1/0.447
1gs4ZK5Androgen receptor/0.446
2azyCHDPhospholipase A2, major isoenzyme3.1.1.40.446
2b00GCHPhospholipase A2, major isoenzyme3.1.1.40.446
2pr2DG1Enoyl-[acyl-carrier-protein] reductase [NADH]1.3.1.90.446
2y46MIVMycinamicin IV hydroxylase/epoxidase/0.446
2zbaZBATrichothecene 3-O-acetyltransferase/0.446
3oagLPQRenin3.4.23.150.446
3vrvYSDVitamin D3 receptor/0.446
4h9753SDihydrofolate reductase1.5.1.30.446
4iarERM5-hydroxytryptamine receptor 1B/0.446
4y93746Tyrosine-protein kinase/0.446
1rd4L08Integrin alpha-L/0.445
1x7rGENEstrogen receptor/0.445
2bifANP6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase 42.7.1.1050.445
2givACOHistone acetyltransferase KAT8/0.445
2piuDHTAndrogen receptor/0.445
2pklDHTAndrogen receptor/0.445
3kpkFADSulfide-quinone reductase/0.445
3r5zF42Uncharacterized protein/0.445
3vtcTK3Vitamin D3 receptor/0.445
3w0aDS5Vitamin D3 receptor/0.445
4bfpSWYTankyrase-22.4.2.300.445
4g210VPVitamin D3 receptor A/0.445
4iaq2GM5-hydroxytryptamine receptor 1B/0.445
4l9q9TPSerum albumin/0.445
4qi7FADCellobiose dehydrogenase/0.445
4tuvCPZCytochrome P450 1191.140.445
5a4kFADNAD(P)H dehydrogenase [quinone] 11.6.5.20.445
5k2dZMAAdenosine receptor A2a/0.445
3qakUKAAdenosine receptor A2a/0.445
1ahiCHO7-alpha-hydroxysteroid dehydrogenase1.1.1.1590.444
1aq1STUCyclin-dependent kinase 22.7.11.220.444
1diuBDMDihydrofolate reductase1.5.1.30.444
1mp0NADAlcohol dehydrogenase class-31.1.1.10.444
1q5dEPBEpothilone C/D epoxidase1.140.444
1s19MC9Vitamin D3 receptor/0.444
1tduCB3Thymidylate synthase/0.444
1xj7DHTAndrogen receptor/0.444
2azzTCHPhospholipase A2, major isoenzyme3.1.1.40.444
2clqSTUMitogen-activated protein kinase kinase kinase 52.7.11.250.444
2pioDHTAndrogen receptor/0.444
3crzFADFerredoxin--NADP+ reductase/0.444
3ey4352Corticosteroid 11-beta-dehydrogenase isozyme 11.1.1.1460.444
3oxv478Gag-Pol polyprotein3.4.23.160.444
3vruYS3Vitamin D3 receptor/0.444
3w0gW07Vitamin D3 receptor/0.444
3wrlCAMCamphor 5-monooxygenase1.14.15.10.444
4anuEM7Phosphatidylinositol 4,5-bisphosphate 3-kinase catalytic subunit gamma isoform2.7.1.1530.444
4g95OAGDihydrofolate reductase1.5.1.30.444
4lxjLANLanosterol 14-alpha demethylase1.14.13.700.444
4q71FADBifunctional protein PutA/0.444
4wo5324Serine/threonine-protein kinase B-raf2.7.11.10.444
4x5jFOLDihydrofolate reductase1.5.1.30.444
2drcMTXDihydrofolate reductase1.5.1.30.443
2fm0M98cAMP-specific 3',5'-cyclic phosphodiesterase 4D3.1.4.530.443
2i4pDRHPeroxisome proliferator-activated receptor gamma/0.443
2p9cNAID-3-phosphoglycerate dehydrogenase1.1.1.950.443
2pivDHTAndrogen receptor/0.443
2vnhFADNADPH:ferredoxin reductase/0.443
2yloTESAndrogen receptor/0.443
3eigMTXDihydrofolate reductase1.5.1.30.443
3fwiCAMCamphor 5-monooxygenase1.14.15.10.443
3fwjCAMCamphor 5-monooxygenase1.14.15.10.443
3ma301ISerine/threonine-protein kinase pim-12.7.11.10.443
3syiFADSulfide-quinone reductase/0.443
3vrwYS5Vitamin D3 receptor/0.443
3vt8YI3Vitamin D3 receptor/0.443
4c7kNAPCorticosteroid 11-beta-dehydrogenase isozyme 11.1.1.1460.443
4i6h1C8Serine/threonine-protein kinase PLK22.7.11.210.443
4iae1DXAlr2278 protein/0.443
5hs1VORLanosterol 14-alpha demethylase/0.443
3sn6P0GBeta-2 adrenergic receptor/0.443
1dyjDDFDihydrofolate reductase1.5.1.30.442
1phePIYCamphor 5-monooxygenase1.14.15.10.442
1tw2ERTCarminomycin 4-O-methyltransferase DnrK2.1.1.2920.442
1uhoVDNcGMP-specific 3',5'-cyclic phosphodiesterase/0.442
1x8lOXRRetinol dehydratase/0.442
2c54NADGDP-mannose 3,5-epimerase5.1.3.180.442
2prh238Dihydroorotate dehydrogenase (quinone), mitochondrial1.3.5.20.442
2zl9VDAVitamin D3 receptor/0.442
3ar6TG1Sarcoplasmic/endoplasmic reticulum calcium ATPase 13.6.3.80.442
3cgfJNFMitogen-activated protein kinase 102.7.11.240.442
3k4s0MOcAMP-specific 3',5'-cyclic phosphodiesterase 4D3.1.4.530.442
3rukAERSteroid 17-alpha-hydroxylase/17,20 lyase/0.442
3wrmCAMCamphor 5-monooxygenase1.14.15.10.442
4b1fKRHGlutamate racemase/0.442
4d7eFADPutative lysine-N-oxygenase/0.442
4wda2AM2',3'-cyclic-nucleotide 3'-phosphodiesterase3.1.4.370.442
4ylfFADDihydroorotate dehydrogenase B (NAD(+)), electron transfer subunit homolog/0.442
1g2vTTPGlucose-1-phosphate thymidylyltransferase/0.441
1ml3NADGlyceraldehyde-3-phosphate dehydrogenase, glycosomal1.2.1.120.441
1pd9CO4Dihydrofolate reductase1.5.1.30.441
1rf9DBRCamphor 5-monooxygenase1.14.15.10.441
1s9pDESEstrogen-related receptor gamma/0.441
1siqFADGlutaryl-CoA dehydrogenase, mitochondrial1.3.8.60.441
2c59NADGDP-mannose 3,5-epimerase5.1.3.180.441
2j0m4STFocal adhesion kinase 12.7.10.20.441
2pixDHTAndrogen receptor/0.441
3cseN22Uncharacterized protein/0.441
3gbuATPUncharacterized sugar kinase PH14592.7.10.441
3vt65YIVitamin D3 receptor/0.441
3zuyTCHTransporter/0.441
4a83DXCMajor pollen allergen Bet v 1-A/0.441
4jbiNDPAlcohol dehydrogenase (Zinc)/0.441
4y8wSTRSteroid 21-hydroxylase/0.441
1cbrREACellular retinoic acid-binding protein 1/0.440
1dxoFADNAD(P)H dehydrogenase [quinone] 11.6.5.20.440
1jomFFODihydrofolate reductase1.5.1.30.440
2belCBOCorticosteroid 11-beta-dehydrogenase isozyme 11.1.1.1460.440
2y0mACOHistone acetyltransferase KAT8/0.440
3bgxMEFThymidylate synthase/0.440
3pqbVGPPutative oxidoreductase/0.440
3tdaPN0Cytochrome P450 2D6/0.440
3zqtTESAndrogen receptor/0.440
4bb6HD1Corticosteroid 11-beta-dehydrogenase isozyme 11.1.1.1460.440
4e5yNDPGDP-L-fucose synthase1.1.1.2710.440
4eiyZMAAdenosine receptor A2a/0.440
4njt017Protease/0.440
5fm7ADPRuvB-like helicase/0.440