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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Protein Data Bank Entry:

1x7r

2.000 Å

X-ray

2004-08-16

Activity from ChEMBL: What is pChEMBL ?
MinMeanMedianStandard DeviationMaxCount
pChEMBL:6.4306.9206.9200.4907.4102

List of CHEMBLId :

CHEMBL44


Interactomes:
Molecular Function:
Binding Site :

Uniprot Annotation

Name:Estrogen receptor
ID:ESR1_HUMAN
AC:P03372
Organism:Homo sapiens
Reign:Eukaryota
TaxID:9606
EC Number:/


Chains:

Chain Name:Percentage of Residues
within binding site
A100 %


Ligand binding site composition:

B-Factor:22.775
Number of residues:33
Including
Standard Amino Acids: 32
Non Standard Amino Acids: 0
Water Molecules: 1
Cofactors:
Metals:

Cavity properties

LigandabilityVolume (Å3)
1.670313.875

% Hydrophobic% Polar
79.5720.43
According to VolSite

Ligand :
1x7r_1 Structure
HET Code: GEN
Formula: C15H9O5
Molecular weight: 269.229 g/mol
DrugBank ID: DB01645
Buried Surface Area:70.3 %
Polar Surface area: 89.82 Å2
Number of
H-Bond Acceptors: 5
H-Bond Donors: 2
Rings: 3
Aromatic rings: 2
Anionic atoms: 1
Cationic atoms: 0
Rule of Five Violation: 0
Rotatable Bonds: 1

Mass center Coordinates

XYZ
15.707231.762922.3558


Binding mode :
What is Poseview ?
  • 2D View
  • 3D View
Binding mode
BioSolveIT Image generated by PoseView
Protein
Binding Site
Ligand
Interaction pattern
hydrophobic (CA)
aromatic (CZ)
hydrogen bond acceptor (O)
hydrogen bond acceptor/donor (OG)
hydrogen bond donor (N)
positively ionized (NZ)
negatively ionized (OD1)
metal (ZN)

Legend:

Represent the protein/ligand binding mode, centered on the ligand
Dashed lines represents hydrogen bonds and metal interactions
Green residue labels for amino acids with hydrophobic contacts (green lines) to the ligand

Image generated using PoseView by BioSolveIT
BioSolveIT


LigandProteinInteraction
AtomAtomResidueDistance
(Å)
Angle (°)Type
C1CEMET- 3433.710Hydrophobic
C5CD1LEU- 3463.870Hydrophobic
C15CD2LEU- 3493.970Hydrophobic
C16CBALA- 3503.970Hydrophobic
O14OE2GLU- 3533.36121.32H-Bond
(Ligand Donor)
O14OE1GLU- 3532.57132.6H-Bond
(Ligand Donor)
C13CBLEU- 3873.550Hydrophobic
C13CD2LEU- 3914.080Hydrophobic
O14NH2ARG- 3942.93144.04H-Bond
(Protein Donor)
C3CEMET- 4213.910Hydrophobic
C4CD1ILE- 4244.070Hydrophobic
O2ND1HIS- 5242.55169.43H-Bond
(Ligand Donor)
C1CD1LEU- 5253.80Hydrophobic
C2CBLEU- 5254.210Hydrophobic