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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
1x7r GEN Estrogen receptor

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
1x7r GENEstrogen receptor / 0.959
1gwq ZTWEstrogen receptor / 0.799
3oll ESTEstrogen receptor beta / 0.762
1g7u PEP2-dehydro-3-deoxyphosphooctonate aldolase 2.5.1.55 0.744
5hyr ESTEstrogen receptor / 0.723
3ols ESTEstrogen receptor beta / 0.715
5dxg ESTEstrogen receptor / 0.713
3l03 4OHEstrogen receptor / 0.705
5dx3 ESTEstrogen receptor / 0.704
2nv7 555Estrogen receptor beta / 0.700
3uud ESTEstrogen receptor / 0.696
4j24 ESTEstrogen receptor beta / 0.696
4pp6 STLEstrogen receptor / 0.696
1x7b 041Estrogen receptor beta / 0.695
1x78 244Estrogen receptor beta / 0.684
1gwr ESTEstrogen receptor / 0.677
4j26 ESTEstrogen receptor beta / 0.672
3ert OHTEstrogen receptor / 0.668
2gpu OHTEstrogen-related receptor gamma / 0.664
1x76 697Estrogen receptor beta / 0.660
4e5f 0N7Polymerase acidic protein / 0.660
1zky 689Estrogen receptor / 0.650