sc-PDB
An Annotated Database of Druggable Binding Sites from the Protein DataBank
An Annotated Database of Druggable Binding Sites from the Protein DataBank
Binding Sites are compared using Shaper.
For more information, please see the following publication:
Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
Binding Sites are considered as similar when the similarity value is greater than 0.44
| PDB ID | HET | Uniprot Name | EC Number |
|---|---|---|---|
| 2gfd | RDA | Endoplasmin |
| PDB ID | HET | Uniprot Name | EC Number | Binding Site Similarity |
Align |
|---|---|---|---|---|---|
| 2gfd | RDA | Endoplasmin | / | 1.000 | |
| 2gqp | PA7 | Endoplasmin | / | 0.576 | |
| 1u2o | NEC | Endoplasmin | / | 0.569 | |
| 2hch | N5A | Endoplasmin | / | 0.556 | |
| 1qy5 | NEC | Endoplasmin | / | 0.553 | |
| 2exl | GDM | Endoplasmin | / | 0.543 | |
| 4fcr | 0TM | Heat shock protein HSP 90-alpha | / | 0.542 | |
| 1ysz | NEC | Endoplasmin | / | 0.540 | |
| 2hg1 | N5O | Endoplasmin | / | 0.536 | |
| 3rlq | 3RQ | Heat shock protein HSP 90-alpha | / | 0.528 | |
| 1u0z | RDC | Endoplasmin | / | 0.522 | |
| 3c11 | GDM | ATP-dependent molecular chaperone HSP82 | / | 0.515 | |
| 1qy8 | RDI | Endoplasmin | / | 0.514 | |
| 2fyp | RDE | Endoplasmin | / | 0.514 | |
| 3hek | BD0 | Heat shock protein HSP 90-alpha | / | 0.513 | |
| 4xc0 | ACP | Heat shock cognate 90 kDa protein | / | 0.513 | |
| 2vw5 | BC6 | ATP-dependent molecular chaperone HSP82 | / | 0.511 | |
| 2xd6 | XD6 | ATP-dependent molecular chaperone HSP82 | / | 0.507 | |
| 3rlr | 3RR | Heat shock protein HSP 90-alpha | / | 0.505 | |
| 2wer | RDC | ATP-dependent molecular chaperone HSP82 | / | 0.504 | |
| 3wha | WHA | Heat shock protein HSP 90-alpha | / | 0.503 | |
| 2byh | 2D7 | Heat shock protein HSP 90-alpha | / | 0.501 | |
| 3ekr | PY9 | Heat shock protein HSP 90-alpha | / | 0.499 | |
| 2wi6 | ZZ6 | Heat shock protein HSP 90-alpha | / | 0.498 | |
| 2bz5 | AB4 | Heat shock protein HSP 90-alpha | / | 0.495 | |
| 2qg0 | A94 | Heat shock protein HSP 90-alpha | / | 0.495 | |
| 3hhu | 819 | Heat shock protein HSP 90-alpha | / | 0.495 | |
| 1byq | ADP | Heat shock protein HSP 90-alpha | / | 0.494 | |
| 2xx2 | 13C | ATP-dependent molecular chaperone HSP82 | / | 0.493 | |
| 3omu | IBD | Heat shock protein 83 | / | 0.493 | |
| 4bqj | XKL | Heat shock protein HSP 90-alpha | / | 0.492 | |
| 2xhr | C0P | Heat shock protein HSP 90-alpha | / | 0.490 | |
| 3r4p | FU7 | Heat shock protein HSP 90-alpha | / | 0.490 | |
| 3vha | VHA | Heat shock protein HSP 90-alpha | / | 0.490 | |
| 4ipe | ANP | TNF receptor-associated protein 1 | / | 0.488 | |
| 2iwu | NP5 | ATP-dependent molecular chaperone HSP82 | / | 0.486 | |
| 1u0y | PA7 | Endoplasmin | / | 0.483 | |
| 2yef | ANP | Heat shock protein HSP 90-alpha | / | 0.482 | |
| 3ft8 | MOJ | Heat shock protein HSP 90-alpha | / | 0.482 | |
| 1yc1 | 4BC | Heat shock protein HSP 90-alpha | / | 0.480 | |
| 2bre | KJ2 | ATP-dependent molecular chaperone HSP82 | / | 0.480 | |
| 1bgq | RDC | ATP-dependent molecular chaperone HSP82 | / | 0.477 | |
| 3peh | IBD | Endoplasmin homolog, putative | / | 0.477 | |
| 4gqt | ADP | Heat shock protein 90 | / | 0.477 | |
| 1y4s | ADP | Chaperone protein HtpG | / | 0.476 | |
| 2bt0 | CT5 | Heat shock protein HSP 90-alpha | / | 0.476 | |
| 3t2s | AGS | Heat shock protein HSP 90-alpha | / | 0.475 | |
| 4jql | VJ6 | Heat shock protein HSP 90-alpha | / | 0.474 | |
| 3b28 | B2X | Heat shock protein HSP 90-alpha | / | 0.473 | |
| 3t10 | ACP | Heat shock protein HSP 90-alpha | / | 0.473 | |
| 2wep | ADP | ATP-dependent molecular chaperone HSP82 | / | 0.469 | |
| 3r4n | FU5 | Heat shock protein HSP 90-alpha | / | 0.469 | |
| 2wi5 | ZZ5 | Heat shock protein HSP 90-alpha | / | 0.467 | |
| 2zdy | ADP | [Pyruvate dehydrogenase (acetyl-transferring)] kinase isozyme 4, mitochondrial | 2.7.11.2 | 0.465 | |
| 3hyz | 42C | Heat shock protein HSP 90-alpha | / | 0.465 | |
| 3k97 | 4CD | Heat shock protein HSP 90-alpha | / | 0.464 | |
| 2yeg | XQG | Heat shock protein HSP 90-alpha | / | 0.463 | |
| 4asg | 814 | ATP-dependent molecular chaperone HSP82 | / | 0.463 | |
| 2xcm | ADP | Cytosolic heat shock protein 90 | / | 0.459 | |
| 4ce1 | 7FK | ATP-dependent molecular chaperone HSP82 | / | 0.458 | |
| 1uy7 | PU4 | Heat shock protein HSP 90-alpha | / | 0.457 | |
| 2byi | 2DD | Heat shock protein HSP 90-alpha | / | 0.457 | |
| 2esa | GDM | Endoplasmin | / | 0.457 | |
| 1am1 | ADP | ATP-dependent molecular chaperone HSP82 | / | 0.456 | |
| 1uy8 | PU5 | Heat shock protein HSP 90-alpha | / | 0.455 | |
| 4eft | EFT | Heat shock protein HSP 90-alpha | / | 0.455 | |
| 1yc3 | 4BC | Heat shock protein HSP 90-alpha | / | 0.454 | |
| 3t1k | ANP | Heat shock protein HSP 90-alpha | / | 0.454 | |
| 4egk | RDC | Heat shock protein HSP 90-alpha | / | 0.454 | |
| 4xcj | ADP | Heat shock cognate 90 kDa protein | / | 0.454 | |
| 2e0a | ANP | [Pyruvate dehydrogenase (acetyl-transferring)] kinase isozyme 4, mitochondrial | 2.7.11.2 | 0.453 | |
| 1uyi | PUZ | Heat shock protein HSP 90-alpha | / | 0.452 | |
| 3d2r | ADP | [Pyruvate dehydrogenase (acetyl-transferring)] kinase isozyme 4, mitochondrial | 2.7.11.2 | 0.452 | |
| 5f5r | ANP | Heat shock protein 75 kDa, mitochondrial | / | 0.452 | |
| 1yet | GDM | Heat shock protein HSP 90-alpha | / | 0.451 | |
| 1xdd | AAY | Integrin alpha-L | / | 0.450 | |
| 2brc | CT5 | ATP-dependent molecular chaperone HSP82 | / | 0.450 | |
| 4xdm | GDM | Heat shock cognate 90 kDa protein | / | 0.450 | |
| 2oor | NAD | NAD(P) transhydrogenase subunit alpha part 1 | 1.6.1.2 | 0.449 | |
| 2xht | C0Y | Heat shock protein HSP 90-alpha | / | 0.449 | |
| 1qlh | NAD | Alcohol dehydrogenase E chain | 1.1.1.1 | 0.448 | |
| 2fxs | RDA | ATP-dependent molecular chaperone HSP82 | / | 0.448 | |
| 2h55 | DZ8 | Heat shock protein HSP 90-alpha | / | 0.448 | |
| 2ijg | FAD | Cryptochrome DASH, chloroplastic/mitochondrial | / | 0.446 | |
| 2iwx | M1S | ATP-dependent molecular chaperone HSP82 | / | 0.446 | |
| 2xx4 | 13I | ATP-dependent molecular chaperone HSP82 | / | 0.446 | |
| 4eag | ATP | 5'-AMP-activated protein kinase subunit gamma-1 | / | 0.446 | |
| 2xk2 | ADP | Heat shock protein HSP 90-alpha | / | 0.445 | |
| 3hz5 | Z64 | Heat shock protein HSP 90-alpha | / | 0.445 | |
| 4b7p | 9UN | Heat shock protein HSP 90-alpha | / | 0.445 | |
| 4ce3 | L4V | ATP-dependent molecular chaperone HSP82 | / | 0.445 | |
| 2iws | NP4 | ATP-dependent molecular chaperone HSP82 | / | 0.444 | |
| 3qdd | 94M | Heat shock protein HSP 90-alpha | / | 0.444 | |
| 1uyh | PU0 | Heat shock protein HSP 90-alpha | / | 0.443 | |
| 2yee | 2EC | Heat shock protein HSP 90-alpha | / | 0.443 | |
| 1uym | PU3 | Heat shock protein HSP 90-beta | / | 0.442 | |
| 2zjm | F1M | Beta-secretase 1 | 3.4.23.46 | 0.442 | |
| 4ce2 | BO5 | ATP-dependent molecular chaperone HSP82 | / | 0.442 | |
| 1lf2 | R37 | Plasmepsin-2 | 3.4.23.39 | 0.441 | |
| 4bqg | 50Q | Heat shock protein HSP 90-alpha | / | 0.441 | |
| 2w0d | CGS | Macrophage metalloelastase | 3.4.24.65 | 0.440 | |
| 3o0i | P54 | Heat shock protein HSP 90-alpha | / | 0.440 |