2.000 Å
X-ray
2008-08-13
Name: | Macrophage metalloelastase |
---|---|
ID: | MMP12_HUMAN |
AC: | P39900 |
Organism: | Homo sapiens |
Reign: | Eukaryota |
TaxID: | 9606 |
EC Number: | 3.4.24.65 |
Chain Name: | Percentage of Residues within binding site |
---|---|
A | 21 % |
C | 79 % |
B-Factor: | 4.885 |
---|---|
Number of residues: | 29 |
Including | |
Standard Amino Acids: | 27 |
Non Standard Amino Acids: | 2 |
Water Molecules: | 0 |
Cofactors: | |
Metals: | ZN |
Ligandability | Volume (Å3) |
---|---|
0.495 | 2079.000 |
% Hydrophobic | % Polar |
---|---|
47.08 | 52.92 |
According to VolSite |
HET Code: | CGS |
---|---|
Formula: | C18H23N3O5S |
Molecular weight: | 393.457 g/mol |
DrugBank ID: | DB07556 |
Buried Surface Area: | 54.75 % |
Polar Surface area: | 117.21 Å2 |
Number of | |
---|---|
H-Bond Acceptors: | 6 |
H-Bond Donors: | 2 |
Rings: | 2 |
Aromatic rings: | 2 |
Anionic atoms: | 0 |
Cationic atoms: | 0 |
Rule of Five Violation: | 0 |
Rotatable Bonds: | 8 |
X | Y | Z |
---|---|---|
-17.2767 | 33.2425 | -29.7349 |
Represent the protein/ligand binding mode, centered on the ligand
Dashed lines represents hydrogen bonds and metal interactions
Green residue labels for amino acids with hydrophobic contacts (green lines) to the ligand
Ligand | Protein | Interaction | |||
---|---|---|---|---|---|
Atom | Atom | Residue | Distance (Å) | Angle (°) | Type |
CG2 | CG1 | ILE- 180 | 3.89 | 0 | Hydrophobic |
CE1 | CB | LEU- 181 | 4.22 | 0 | Hydrophobic |
C17 | CD1 | LEU- 181 | 4.16 | 0 | Hydrophobic |
O33 | N | LEU- 181 | 2.84 | 177.17 | H-Bond (Protein Donor) |
N35 | O | ALA- 182 | 2.79 | 140.06 | H-Bond (Ligand Donor) |
CG1 | CB | HIS- 183 | 4.49 | 0 | Hydrophobic |
CD1 | CG2 | THR- 215 | 3.82 | 0 | Hydrophobic |
COM | CB | HIS- 218 | 3.65 | 0 | Hydrophobic |
C20 | CB | HIS- 218 | 3.9 | 0 | Hydrophobic |
CC | CB | PRO- 238 | 4.08 | 0 | Hydrophobic |
COM | CD2 | TYR- 240 | 4.18 | 0 | Hydrophobic |
CD2 | CB | TYR- 240 | 3.92 | 0 | Hydrophobic |
O47 | ZN | ZN- 1264 | 2.14 | 0 | Metal Acceptor |
O48 | ZN | ZN- 1264 | 2.23 | 0 | Metal Acceptor |