2.000 Å
X-ray
2008-08-13
| Name: | Macrophage metalloelastase |
|---|---|
| ID: | MMP12_HUMAN |
| AC: | P39900 |
| Organism: | Homo sapiens |
| Reign: | Eukaryota |
| TaxID: | 9606 |
| EC Number: | 3.4.24.65 |
| Chain Name: | Percentage of Residues within binding site |
|---|---|
| A | 21 % |
| C | 79 % |
| B-Factor: | 4.885 |
|---|---|
| Number of residues: | 29 |
| Including | |
| Standard Amino Acids: | 27 |
| Non Standard Amino Acids: | 2 |
| Water Molecules: | 0 |
| Cofactors: | |
| Metals: | ZN |
| Ligandability | Volume (Å3) |
|---|---|
| 0.495 | 2079.000 |
| % Hydrophobic | % Polar |
|---|---|
| 47.08 | 52.92 |
| According to VolSite | |

| HET Code: | CGS |
|---|---|
| Formula: | C18H23N3O5S |
| Molecular weight: | 393.457 g/mol |
| DrugBank ID: | DB07556 |
| Buried Surface Area: | 54.75 % |
| Polar Surface area: | 117.21 Å2 |
| Number of | |
|---|---|
| H-Bond Acceptors: | 6 |
| H-Bond Donors: | 2 |
| Rings: | 2 |
| Aromatic rings: | 2 |
| Anionic atoms: | 0 |
| Cationic atoms: | 0 |
| Rule of Five Violation: | 0 |
| Rotatable Bonds: | 8 |
| X | Y | Z |
|---|---|---|
| -17.2767 | 33.2425 | -29.7349 |
Image generated by PoseView
Represent the protein/ligand binding mode, centered on the ligand
Dashed lines represents hydrogen bonds and metal interactions
Green residue labels for amino acids with hydrophobic contacts (green lines) to the ligand
| Ligand | Protein | Interaction | |||
|---|---|---|---|---|---|
| Atom | Atom | Residue | Distance (Å) | Angle (°) | Type |
| CG2 | CG1 | ILE- 180 | 3.89 | 0 | Hydrophobic |
| CE1 | CB | LEU- 181 | 4.22 | 0 | Hydrophobic |
| C17 | CD1 | LEU- 181 | 4.16 | 0 | Hydrophobic |
| O33 | N | LEU- 181 | 2.84 | 177.17 | H-Bond (Protein Donor) |
| N35 | O | ALA- 182 | 2.79 | 140.06 | H-Bond (Ligand Donor) |
| CG1 | CB | HIS- 183 | 4.49 | 0 | Hydrophobic |
| CD1 | CG2 | THR- 215 | 3.82 | 0 | Hydrophobic |
| COM | CB | HIS- 218 | 3.65 | 0 | Hydrophobic |
| C20 | CB | HIS- 218 | 3.9 | 0 | Hydrophobic |
| CC | CB | PRO- 238 | 4.08 | 0 | Hydrophobic |
| COM | CD2 | TYR- 240 | 4.18 | 0 | Hydrophobic |
| CD2 | CB | TYR- 240 | 3.92 | 0 | Hydrophobic |
| O47 | ZN | ZN- 1264 | 2.14 | 0 | Metal Acceptor |
| O48 | ZN | ZN- 1264 | 2.23 | 0 | Metal Acceptor |