Binding Sites are compared using Shaper.
For more information, please see the following publication:
Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
Binding Sites are considered as similar when the similarity value is greater than 0.44
| PDB ID | HET | Uniprot Name | EC Number |
|---|---|---|---|
| 1hnh | COA | 3-oxoacyl-[acyl-carrier-protein] synthase 3 |
| PDB ID | HET | Uniprot Name | EC Number | Binding Site Similarity |
Align |
|---|---|---|---|---|---|
| 1hnh | COA | 3-oxoacyl-[acyl-carrier-protein] synthase 3 | / | 1.000 | |
| 1hnd | COA | 3-oxoacyl-[acyl-carrier-protein] synthase 3 | / | 0.652 | |
| 1hnj | MLC | 3-oxoacyl-[acyl-carrier-protein] synthase 3 | / | 0.625 | |
| 2gyo | COA | 3-oxoacyl-[acyl-carrier-protein] synthase 3 | / | 0.565 | |
| 1mzs | 669 | 3-oxoacyl-[acyl-carrier-protein] synthase 3 | / | 0.560 | |
| 2eft | COA | 3-oxoacyl-[acyl-carrier-protein] synthase 3 | / | 0.532 | |
| 1ebl | COA | 3-oxoacyl-[acyl-carrier-protein] synthase 3 | / | 0.500 | |
| 3cop | ADP | Glycogen synthase | 2.4.1.21 | 0.487 | |
| 3il4 | ACO | 3-oxoacyl-[acyl-carrier-protein] synthase 3 | / | 0.486 | |
| 3iae | D7K | Benzaldehyde lyase | / | 0.481 | |
| 2bu9 | HFV | Isopenicillin N synthase | 1.21.3.1 | 0.478 | |
| 4g2i | 0VQ | Vitamin D3 receptor | / | 0.477 | |
| 2hcd | BIV | Vitamin D3 receptor A | / | 0.474 | |
| 4dc0 | NDP | Putative ketoacyl reductase | 1.3.1 | 0.474 | |
| 1fdw | EST | Estradiol 17-beta-dehydrogenase 1 | 1.1.1.62 | 0.473 | |
| 4ia3 | BIV | Vitamin D3 receptor A | / | 0.472 | |
| 3flk | NAI | Tartrate dehydrogenase/decarboxylase | 1.1.1.93 | 0.471 | |
| 3ixp | 834 | Ecdysone receptor | / | 0.470 | |
| 3vt4 | 5YI | Vitamin D3 receptor | / | 0.470 | |
| 4ure | 1PS | Cyclohexanol dehydrogenase | / | 0.470 | |
| 2hb7 | O1C | Vitamin D3 receptor | / | 0.469 | |
| 2o4r | VD5 | Vitamin D3 receptor | / | 0.468 | |
| 1ppj | ANY | Cytochrome b | / | 0.467 | |
| 1zeo | C01 | Peroxisome proliferator-activated receptor gamma | / | 0.467 | |
| 2iod | MYC | Dihydroflavonol 4-reductase | 1.1.1.219 | 0.467 | |
| 3d7k | D7K | Benzaldehyde lyase | / | 0.467 | |
| 3il5 | B82 | 3-oxoacyl-[acyl-carrier-protein] synthase 3 | / | 0.466 | |
| 1fdu | EST | Estradiol 17-beta-dehydrogenase 1 | 1.1.1.62 | 0.465 | |
| 1i2c | UPG | UDP-sulfoquinovose synthase, chloroplastic | 3.13.1.1 | 0.465 | |
| 2qo9 | ANP | Ephrin type-A receptor 3 | 2.7.10.1 | 0.465 | |
| 2uxo | TAC | HTH-type transcriptional regulator TtgR | / | 0.465 | |
| 3w5t | LHP | Vitamin D3 receptor | / | 0.465 | |
| 1pow | FAD | Pyruvate oxidase | 1.2.3.3 | 0.463 | |
| 3w5p | 4OA | Vitamin D3 receptor | / | 0.463 | |
| 4n4v | 2GY | Tankyrase-1 | 2.4.2.30 | 0.463 | |
| 1hrv | SDZ | Genome polyprotein | / | 0.462 | |
| 1piw | NAP | NADP-dependent alcohol dehydrogenase 6 | 1.1.1.2 | 0.462 | |
| 2nq8 | ZID | Enoyl-ACP reductase | / | 0.462 | |
| 4dbz | NDP | Putative ketoacyl reductase | 1.3.1 | 0.462 | |
| 1fml | RTL | Retinol dehydratase | / | 0.461 | |
| 3stv | 3HO | Methylketone synthase I | / | 0.461 | |
| 4wda | 2AM | 2',3'-cyclic-nucleotide 3'-phosphodiesterase | 3.1.4.37 | 0.461 | |
| 2w4q | CBW | Prostaglandin reductase 2 | 1.3.1.48 | 0.460 | |
| 2ym1 | FAD | Phenylacetone monooxygenase | 1.14.13.92 | 0.460 | |
| 4ead | 0NP | Thymidine phosphorylase | 2.4.2.4 | 0.460 | |
| 1r6g | 442 | Thyroid hormone receptor beta | / | 0.459 | |
| 1txi | TX5 | Vitamin D3 receptor | / | 0.459 | |
| 2pr2 | DG1 | Enoyl-[acyl-carrier-protein] reductase [NADH] | 1.3.1.9 | 0.459 | |
| 3gmd | 2M3 | Corticosteroid 11-beta-dehydrogenase isozyme 1 | 1.1.1.146 | 0.459 | |
| 3ssn | MVI | Mycinamicin VI 2''-O-methyltransferase | / | 0.459 | |
| 3w0c | 6DS | Vitamin D3 receptor | / | 0.459 | |
| 4b1f | KRH | Glutamate racemase | / | 0.459 | |
| 1p44 | NAD | Enoyl-[acyl-carrier-protein] reductase [NADH] | 1.3.1.9 | 0.458 | |
| 2zb4 | 5OP | Prostaglandin reductase 2 | 1.3.1.48 | 0.458 | |
| 3iw1 | ASD | Steroid C26-monooxygenase | 1.14.13.141 | 0.458 | |
| 4ozn | ATP | Ammonium transporter | / | 0.458 | |
| 1e6w | NAD | 3-hydroxyacyl-CoA dehydrogenase type-2 | 1.1.1.35 | 0.457 | |
| 3d4p | NAD | L-lactate dehydrogenase 1 | 1.1.1.27 | 0.457 | |
| 3qlr | NDP | Dihydrofolate reductase | 1.5.1.3 | 0.457 | |
| 1nq7 | ARL | Nuclear receptor ROR-beta | / | 0.456 | |
| 2cig | 1DG | Dihydrofolate reductase | 1.5.1.3 | 0.456 | |
| 3il6 | B83 | 3-oxoacyl-[acyl-carrier-protein] synthase 3 | / | 0.456 | |
| 3vt9 | YI4 | Vitamin D3 receptor | / | 0.456 | |
| 4i4b | 1CV | 3-hydroxy-3-methylglutaryl-coenzyme A reductase | 1.1.1.88 | 0.456 | |
| 4qi5 | FAD | Cellobiose dehydrogenase | / | 0.456 | |
| 4xgu | ADP | Putative pachytene checkpoint protein 2 | / | 0.456 | |
| 1r2j | FAD | FkbI | / | 0.455 | |
| 3fco | IIG | Corticosteroid 11-beta-dehydrogenase isozyme 1 | 1.1.1.146 | 0.455 | |
| 3otb | DGT | Probable tRNA(His) guanylyltransferase | 2.7.7.79 | 0.455 | |
| 5kp2 | COA | 3-oxoacyl-[acyl-carrier-protein] synthase 3 protein 2 | / | 0.455 | |
| 1mcz | RMN | Benzoylformate decarboxylase | 4.1.1.7 | 0.454 | |
| 2gdz | NAD | 15-hydroxyprostaglandin dehydrogenase [NAD(+)] | 1.1.1.141 | 0.454 | |
| 2r0p | K2C | Putative FAD-monooxygenase | / | 0.454 | |
| 2r2n | KYN | Kynurenine/alpha-aminoadipate aminotransferase, mitochondrial | 2.6.1.39 | 0.454 | |
| 3cuk | FAD | D-amino-acid oxidase | 1.4.3.3 | 0.454 | |
| 3kjr | NAP | Bifunctional dihydrofolate reductase-thymidylate synthase | / | 0.454 | |
| 3zw9 | NAD | Peroxisomal bifunctional enzyme | 1.1.1.35 | 0.454 | |
| 4bfy | ZVY | Pantothenate kinase | 2.7.1.33 | 0.454 | |
| 4xcv | NDP | Probable hydroxyacid dehydrogenase protein | / | 0.454 | |
| 3sn6 | P0G | Beta-2 adrenergic receptor | / | 0.454 | |
| 1kbq | FAD | NAD(P)H dehydrogenase [quinone] 1 | 1.6.5.2 | 0.453 | |
| 1upw | 444 | Oxysterols receptor LXR-beta | / | 0.453 | |
| 1uxj | NAD | Malate dehydrogenase | / | 0.453 | |
| 2zl9 | VDA | Vitamin D3 receptor | / | 0.453 | |
| 4n3c | UD1 | UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110 kDa subunit | / | 0.453 | |
| 1f0x | FAD | D-lactate dehydrogenase | 1.1.1.28 | 0.452 | |
| 1f5f | DHT | Sex hormone-binding globulin | / | 0.452 | |
| 1iy8 | NAD | Levodione reductase | / | 0.452 | |
| 1n4h | REA | Nuclear receptor ROR-beta | / | 0.452 | |
| 1osv | CHC | Bile acid receptor | / | 0.452 | |
| 2i0z | FAD | NAD(FAD)-utilizing dehydrogenases | / | 0.452 | |
| 2ylx | FAD | Phenylacetone monooxygenase | 1.14.13.92 | 0.452 | |
| 3bej | MUF | Bile acid receptor | / | 0.452 | |
| 4ia7 | BIV | Vitamin D3 receptor A | / | 0.452 | |
| 4kwh | NAP | Reductase homolog | / | 0.452 | |
| 5cds | PFB | Alcohol dehydrogenase E chain | 1.1.1.1 | 0.452 | |
| 2d29 | FAD | Acyl-CoA dehydrogenase | / | 0.451 | |
| 2ob0 | ACO | N-alpha-acetyltransferase 50 | / | 0.451 | |
| 2xw7 | NDP | Dihydrofolate reductase | / | 0.451 | |
| 3ha3 | SAH | Hydroxymycolate synthase MmaA4 | 2.1.1 | 0.451 | |
| 3i1y | 33N | Bifunctional epoxide hydrolase 2 | 3.3.2.10 | 0.451 | |
| 4m9a | FDA | Acyl-CoA dehydrogenase | / | 0.451 | |
| 1kc1 | NDP | dTDP-4-dehydrorhamnose reductase | 1.1.1.133 | 0.450 | |
| 1kt3 | RTL | Retinol-binding protein 4 | / | 0.450 | |
| 1uuo | BRF | Dihydroorotate dehydrogenase (quinone), mitochondrial | 1.3.5.2 | 0.450 | |
| 4ceq | QCH | Integrase | / | 0.450 | |
| 4f7i | NAD | 3-isopropylmalate dehydrogenase | 1.1.1.85 | 0.450 | |
| 4itf | TFY | Vitamin D3 receptor | / | 0.450 | |
| 1trg | CB3 | Thymidylate synthase | / | 0.449 | |
| 2ztl | NAD | D(-)-3-hydroxybutyrate dehydrogenase | / | 0.449 | |
| 4an4 | DUD | Putative glycosyl transferase | / | 0.449 | |
| 4g21 | 0VP | Vitamin D3 receptor A | / | 0.449 | |
| 4g67 | SAH | Uncharacterized ACR, COG1565 superfamily | / | 0.449 | |
| 4gh5 | NAD | Short-chain dehydrogenase/reductase SDR | / | 0.449 | |
| 4rup | H97 | Vitamin D3 receptor A | / | 0.449 | |
| 5irn | ADP | Nucleotide binding oligomerization domain containing 2 | / | 0.449 | |
| 5iub | CLR | Adenosine receptor A2a | / | 0.449 | |
| 1q20 | PLO | Sulfotransferase family cytosolic 2B member 1 | 2.8.2.2 | 0.448 | |
| 1z7y | AA5 | Cysteine synthase 1 | 2.5.1.47 | 0.448 | |
| 2jn3 | JN3 | Fatty acid-binding protein, liver | / | 0.448 | |
| 3a78 | 3EV | Vitamin D3 receptor | / | 0.448 | |
| 3ha7 | B32 | Hydroxymycolate synthase MmaA4 | 2.1.1 | 0.448 | |
| 4zj8 | SUV | Orexin receptor type 1 | / | 0.448 | |
| 1qrr | UPG | UDP-sulfoquinovose synthase, chloroplastic | 3.13.1.1 | 0.447 | |
| 2hdh | NAD | Hydroxyacyl-coenzyme A dehydrogenase, mitochondrial | 1.1.1.35 | 0.447 | |
| 2hzi | JIN | Tyrosine-protein kinase ABL1 | 2.7.10.2 | 0.447 | |
| 2yg4 | FAD | Putrescine oxidase | / | 0.447 | |
| 3kjs | NAP | Bifunctional dihydrofolate reductase-thymidylate synthase | / | 0.447 | |
| 3pe2 | E1B | Casein kinase II subunit alpha | 2.7.11.1 | 0.447 | |
| 3zh8 | C58 | Protein kinase C iota type | 2.7.11.13 | 0.447 | |
| 4fhh | 0U3 | Vitamin D3 receptor A | / | 0.447 | |
| 4g2h | 0VQ | Vitamin D3 receptor A | / | 0.447 | |
| 4k4e | K4E | Tankyrase-1 | 2.4.2.30 | 0.447 | |
| 4wdb | 2AM | 2',3'-cyclic-nucleotide 3'-phosphodiesterase | 3.1.4.37 | 0.447 | |
| 1obn | ASV | Isopenicillin N synthase | 1.21.3.1 | 0.446 | |
| 1qyx | ASD | Estradiol 17-beta-dehydrogenase 1 | 1.1.1.62 | 0.446 | |
| 1rkh | VD2 | Vitamin D3 receptor | / | 0.446 | |
| 1y5r | C0R | Corticosteroid 11-beta-dehydrogenase isozyme 1 | 1.1.1.146 | 0.446 | |
| 2iyg | FMN | AppA, antirepressor of ppsR, sensor of blue light | / | 0.446 | |
| 3d3w | NAP | L-xylulose reductase | 1.1.1.10 | 0.446 | |
| 3oqk | S52 | Renin | 3.4.23.15 | 0.446 | |
| 3vtb | TKA | Vitamin D3 receptor | / | 0.446 | |
| 4ewn | 0VR | Imidazole glycerol phosphate synthase subunit HisF | 4.1.3 | 0.446 | |
| 4g95 | OAG | Dihydrofolate reductase | 1.5.1.3 | 0.446 | |
| 4lt6 | 3AT | Poly(A) polymerase gamma | 2.7.7.19 | 0.446 | |
| 1bil | 0IU | Renin | 3.4.23.15 | 0.445 | |
| 1fnd | A2P | Ferredoxin--NADP reductase, chloroplastic | 1.18.1.2 | 0.445 | |
| 1ie8 | KH1 | Vitamin D3 receptor | / | 0.445 | |
| 1opb | RET | Retinol-binding protein 2 | / | 0.445 | |
| 2psw | COA | N-alpha-acetyltransferase 50 | / | 0.445 | |
| 2rqf | JH3 | Hemolymph juvenile hormone binding protein | / | 0.445 | |
| 2xvf | FAD | Putative flavin-containing monooxygenase | / | 0.445 | |
| 3dr1 | C5D | Vitamin D3 receptor A | / | 0.445 | |
| 3eku | CY9 | Actin-5C | / | 0.445 | |
| 3gfb | NAD | L-threonine 3-dehydrogenase | / | 0.445 | |
| 3jqp | A2P | Ferredoxin--NADP reductase, apicoplast | / | 0.445 | |
| 3q7d | NPX | Prostaglandin G/H synthase 2 | 1.14.99.1 | 0.445 | |
| 4bcr | WY1 | Peroxisome proliferator-activated receptor alpha | / | 0.445 | |
| 4hzo | COA | Conserved hypthetical protein | / | 0.445 | |
| 4irn | FAD | AnaB | / | 0.445 | |
| 4u2l | SFD | Cholesterol oxidase | 1.1.3.6 | 0.445 | |
| 4wuo | NAD | 3-isopropylmalate dehydrogenase | 1.1.1.85 | 0.445 | |
| 4z5w | ILE_THR_GLN_TYS_TYS | Phytosulfokine receptor 1 | 2.7.11.1 | 0.445 | |
| 1i24 | UPG | UDP-sulfoquinovose synthase, chloroplastic | 3.13.1.1 | 0.444 | |
| 1siq | FAD | Glutaryl-CoA dehydrogenase, mitochondrial | 1.3.8.6 | 0.444 | |
| 1x8l | OXR | Retinol dehydratase | / | 0.444 | |
| 2zb8 | IMN | Prostaglandin reductase 2 | 1.3.1.48 | 0.444 | |
| 3a9w | NAD | NDP-sugar epimerase | / | 0.444 | |
| 3bhi | NAP | Carbonyl reductase [NADPH] 1 | 1.1.1.184 | 0.444 | |
| 3d8b | ADP | Fidgetin-like protein 1 | 3.6.4 | 0.444 | |
| 3dhe | AND | Estradiol 17-beta-dehydrogenase 1 | 1.1.1.62 | 0.444 | |
| 3gqo | APR | Non-structural polyprotein | / | 0.444 | |
| 3vdq | NAD | 3-hydroxybutyrate dehydrogenase | / | 0.444 | |
| 3vrw | YS5 | Vitamin D3 receptor | / | 0.444 | |
| 3w0j | T08 | Vitamin D3 receptor | / | 0.444 | |
| 4eqw | COA | Coenzyme A disulfide reductase | / | 0.444 | |
| 4ge7 | 0K5 | Kynurenine/alpha-aminoadipate aminotransferase, mitochondrial | 2.6.1.39 | 0.444 | |
| 4iar | ERM | 5-hydroxytryptamine receptor 1B | / | 0.444 | |
| 1d4p | BPP | Prothrombin | 3.4.21.5 | 0.443 | |
| 1fm4 | DXC | Major pollen allergen Bet v 1-L | / | 0.443 | |
| 1mq4 | ADP | Aurora kinase A | 2.7.11.1 | 0.443 | |
| 1tl7 | FOK | Adenylate cyclase type 2 | / | 0.443 | |
| 1tl7 | FOK | Adenylate cyclase type 5 | / | 0.443 | |
| 2h2q | NAP | Bifunctional dihydrofolate reductase-thymidylate synthase | 1.5.1.3 | 0.443 | |
| 2has | C3O | Vitamin D3 receptor | / | 0.443 | |
| 2z3u | CRR | Cytochrome P450 | / | 0.443 | |
| 3h3s | H15 | Collagen type IV alpha-3-binding protein | / | 0.443 | |
| 3uic | NAD | Enoyl-[acyl-carrier-protein] reductase [NADH] | / | 0.443 | |
| 3w5q | 3KL | Vitamin D3 receptor | / | 0.443 | |
| 4cj4 | S3G | Integrase | / | 0.443 | |
| 4k4f | K4F | Tankyrase-1 | 2.4.2.30 | 0.443 | |
| 4zuk | NAD | Alpha-aminoadipic semialdehyde dehydrogenase | 1.2.1.31 | 0.443 | |
| 1crb | RTL | Retinol-binding protein 1 | / | 0.442 | |
| 1db1 | VDX | Vitamin D3 receptor | / | 0.442 | |
| 1dr3 | TAP | Dihydrofolate reductase | 1.5.1.3 | 0.442 | |
| 1v35 | NAI | Enoyl-ACP reductase | / | 0.442 | |
| 1v9a | SAH | Uncharacterized protein | / | 0.442 | |
| 1yb5 | NAP | Quinone oxidoreductase | 1.6.5.5 | 0.442 | |
| 2b3d | FAD | Modulator of drug activity B | / | 0.442 | |
| 2fk8 | SAM | Hydroxymycolate synthase MmaA4 | 2.1.1 | 0.442 | |
| 2vbd | V10 | Isopenicillin N synthase | 1.21.3.1 | 0.442 | |
| 3ajr | NAD | NDP-sugar epimerase | / | 0.442 | |
| 3caq | NDP | 3-oxo-5-beta-steroid 4-dehydrogenase | / | 0.442 | |
| 3maa | FKP | Adenylate cyclase type 2 | / | 0.442 | |
| 3maa | FKP | Adenylate cyclase type 5 | / | 0.442 | |
| 3of2 | NAD | Enoyl-[acyl-carrier-protein] reductase [NADH] | 1.3.1.9 | 0.442 | |
| 3vtd | TKD | Vitamin D3 receptor | / | 0.442 | |
| 4b2g | V1N | Uncharacterized protein | / | 0.442 | |
| 4geb | 0LD | Kynurenine/alpha-aminoadipate aminotransferase, mitochondrial | 2.6.1.39 | 0.442 | |
| 4qe6 | JN3 | Bile acid receptor | / | 0.442 | |
| 4tuv | CPZ | Cytochrome P450 119 | 1.14 | 0.442 | |
| 5cb5 | APR | O-acetyl-ADP-ribose deacetylase | / | 0.442 | |
| 1cul | FOK | Adenylate cyclase type 2 | / | 0.441 | |
| 1cul | FOK | Adenylate cyclase type 5 | / | 0.441 | |
| 1e8h | ADP | Vanillyl-alcohol oxidase | 1.1.3.38 | 0.441 | |
| 1emd | NAD | Malate dehydrogenase | / | 0.441 | |
| 1pox | FAD | Pyruvate oxidase | 1.2.3.3 | 0.441 | |
| 1rsg | FAD | Polyamine oxidase FMS1 | / | 0.441 | |
| 2gvd | FKP | Adenylate cyclase type 2 | / | 0.441 | |
| 2gvd | FKP | Adenylate cyclase type 5 | / | 0.441 | |
| 3a6q | FMN | FMN-binding protein | / | 0.441 | |
| 3ijd | C2F | Methylenetetrahydrofolate reductase | / | 0.441 | |
| 3r4o | FU3 | Heat shock protein HSP 90-alpha | / | 0.441 | |
| 3vru | YS3 | Vitamin D3 receptor | / | 0.441 | |
| 4abk | AR6 | Poly [ADP-ribose] polymerase 14 | 2.4.2.30 | 0.441 | |
| 4eb4 | D16 | Thymidylate synthase | 2.1.1.45 | 0.441 | |
| 4fmx | CNL | 1,8-cineole 2-endo-monooxygenase | 1.14.13.156 | 0.441 | |
| 4go2 | TAP | Cytosolic 10-formyltetrahydrofolate dehydrogenase | 1.5.1.6 | 0.441 | |
| 4jda | A9S | Abscisic acid receptor PYL3 | / | 0.441 | |
| 4nfh | PFB | Alcohol dehydrogenase E chain | 1.1.1.1 | 0.441 | |
| 4z24 | FAD | Putative GMC-type oxidoreductase R135 | 1 | 0.441 | |
| 5idw | NAP | Short-chain dehydrogenase/reductase SDR | / | 0.441 | |
| 1equ | EQI | Estradiol 17-beta-dehydrogenase 1 | 1.1.1.62 | 0.440 | |
| 1ib0 | NAD | NADH-cytochrome b5 reductase 3 | 1.6.2.2 | 0.440 | |
| 1kbo | FAD | NAD(P)H dehydrogenase [quinone] 1 | 1.6.5.2 | 0.440 | |
| 1kr2 | TAD | Nicotinamide/nicotinic acid mononucleotide adenylyltransferase 1 | 2.7.7.1 | 0.440 | |
| 3csd | EMO | Putative ketoacyl reductase | 1.3.1 | 0.440 | |
| 3ha5 | SFG | Hydroxymycolate synthase MmaA4 | 2.1.1 | 0.440 | |
| 3ta0 | ATP | Nitrogen regulatory protein P-II (GlnB-3) | / | 0.440 | |
| 3vt3 | VDX | Vitamin D3 receptor | / | 0.440 | |
| 4at0 | FAD | Possible succinate dehydrogenase | / | 0.440 | |
| 4o71 | CPB | Bromodomain-containing protein 4 | / | 0.440 | |
| 5kj1 | PFB | Alcohol dehydrogenase E chain | 1.1.1.1 | 0.440 |