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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Binding site similarity measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Binding Sites are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
Binding Sites are considered as similar when the similarity value is greater than 0.44

Reference Protein Data Bank Entry :
PDB IDHETUniprot NameEC Number
1hnhCOA3-oxoacyl-[acyl-carrier-protein] synthase 3

Complex with similar binding sites

PDB ID HET Uniprot Name EC Number Binding Site
Similarity
Align
1hnhCOA3-oxoacyl-[acyl-carrier-protein] synthase 3/1.000
1hndCOA3-oxoacyl-[acyl-carrier-protein] synthase 3/0.652
1hnjMLC3-oxoacyl-[acyl-carrier-protein] synthase 3/0.625
2gyoCOA3-oxoacyl-[acyl-carrier-protein] synthase 3/0.565
1mzs6693-oxoacyl-[acyl-carrier-protein] synthase 3/0.560
2eftCOA3-oxoacyl-[acyl-carrier-protein] synthase 3/0.532
1eblCOA3-oxoacyl-[acyl-carrier-protein] synthase 3/0.500
3copADPGlycogen synthase2.4.1.210.487
3il4ACO3-oxoacyl-[acyl-carrier-protein] synthase 3/0.486
3iaeD7KBenzaldehyde lyase/0.481
2bu9HFVIsopenicillin N synthase1.21.3.10.478
4g2i0VQVitamin D3 receptor/0.477
2hcdBIVVitamin D3 receptor A/0.474
4dc0NDPPutative ketoacyl reductase1.3.10.474
1fdwESTEstradiol 17-beta-dehydrogenase 11.1.1.620.473
4ia3BIVVitamin D3 receptor A/0.472
3flkNAITartrate dehydrogenase/decarboxylase1.1.1.930.471
3ixp834Ecdysone receptor/0.470
3vt45YIVitamin D3 receptor/0.470
4ure1PSCyclohexanol dehydrogenase/0.470
2hb7O1CVitamin D3 receptor/0.469
2o4rVD5Vitamin D3 receptor/0.468
1ppjANYCytochrome b/0.467
1zeoC01Peroxisome proliferator-activated receptor gamma/0.467
2iodMYCDihydroflavonol 4-reductase1.1.1.2190.467
3d7kD7KBenzaldehyde lyase/0.467
3il5B823-oxoacyl-[acyl-carrier-protein] synthase 3/0.466
1fduESTEstradiol 17-beta-dehydrogenase 11.1.1.620.465
1i2cUPGUDP-sulfoquinovose synthase, chloroplastic3.13.1.10.465
2qo9ANPEphrin type-A receptor 32.7.10.10.465
2uxoTACHTH-type transcriptional regulator TtgR/0.465
3w5tLHPVitamin D3 receptor/0.465
1powFADPyruvate oxidase1.2.3.30.463
3w5p4OAVitamin D3 receptor/0.463
4n4v2GYTankyrase-12.4.2.300.463
1hrvSDZGenome polyprotein/0.462
1piwNAPNADP-dependent alcohol dehydrogenase 61.1.1.20.462
2nq8ZIDEnoyl-ACP reductase/0.462
4dbzNDPPutative ketoacyl reductase1.3.10.462
1fmlRTLRetinol dehydratase/0.461
3stv3HOMethylketone synthase I/0.461
4wda2AM2',3'-cyclic-nucleotide 3'-phosphodiesterase3.1.4.370.461
2w4qCBWProstaglandin reductase 21.3.1.480.460
2ym1FADPhenylacetone monooxygenase1.14.13.920.460
4ead0NPThymidine phosphorylase2.4.2.40.460
1r6g442Thyroid hormone receptor beta/0.459
1txiTX5Vitamin D3 receptor/0.459
2pr2DG1Enoyl-[acyl-carrier-protein] reductase [NADH]1.3.1.90.459
3gmd2M3Corticosteroid 11-beta-dehydrogenase isozyme 11.1.1.1460.459
3ssnMVIMycinamicin VI 2''-O-methyltransferase/0.459
3w0c6DSVitamin D3 receptor/0.459
4b1fKRHGlutamate racemase/0.459
1p44NADEnoyl-[acyl-carrier-protein] reductase [NADH]1.3.1.90.458
2zb45OPProstaglandin reductase 21.3.1.480.458
3iw1ASDSteroid C26-monooxygenase1.14.13.1410.458
4oznATPAmmonium transporter/0.458
1e6wNAD3-hydroxyacyl-CoA dehydrogenase type-21.1.1.350.457
3d4pNADL-lactate dehydrogenase 11.1.1.270.457
3qlrNDPDihydrofolate reductase1.5.1.30.457
1nq7ARLNuclear receptor ROR-beta/0.456
2cig1DGDihydrofolate reductase1.5.1.30.456
3il6B833-oxoacyl-[acyl-carrier-protein] synthase 3/0.456
3vt9YI4Vitamin D3 receptor/0.456
4i4b1CV3-hydroxy-3-methylglutaryl-coenzyme A reductase1.1.1.880.456
4qi5FADCellobiose dehydrogenase/0.456
4xguADPPutative pachytene checkpoint protein 2/0.456
1r2jFADFkbI/0.455
3fcoIIGCorticosteroid 11-beta-dehydrogenase isozyme 11.1.1.1460.455
3otbDGTProbable tRNA(His) guanylyltransferase2.7.7.790.455
5kp2COA3-oxoacyl-[acyl-carrier-protein] synthase 3 protein 2/0.455
1mczRMNBenzoylformate decarboxylase4.1.1.70.454
2gdzNAD15-hydroxyprostaglandin dehydrogenase [NAD(+)]1.1.1.1410.454
2r0pK2CPutative FAD-monooxygenase/0.454
2r2nKYNKynurenine/alpha-aminoadipate aminotransferase, mitochondrial2.6.1.390.454
3cukFADD-amino-acid oxidase1.4.3.30.454
3kjrNAPBifunctional dihydrofolate reductase-thymidylate synthase/0.454
3zw9NADPeroxisomal bifunctional enzyme1.1.1.350.454
4bfyZVYPantothenate kinase2.7.1.330.454
4xcvNDPProbable hydroxyacid dehydrogenase protein/0.454
3sn6P0GBeta-2 adrenergic receptor/0.454
1kbqFADNAD(P)H dehydrogenase [quinone] 11.6.5.20.453
1upw444Oxysterols receptor LXR-beta/0.453
1uxjNADMalate dehydrogenase/0.453
2zl9VDAVitamin D3 receptor/0.453
4n3cUD1UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110 kDa subunit/0.453
1f0xFADD-lactate dehydrogenase1.1.1.280.452
1f5fDHTSex hormone-binding globulin/0.452
1iy8NADLevodione reductase/0.452
1n4hREANuclear receptor ROR-beta/0.452
1osvCHCBile acid receptor/0.452
2i0zFADNAD(FAD)-utilizing dehydrogenases/0.452
2ylxFADPhenylacetone monooxygenase1.14.13.920.452
3bejMUFBile acid receptor/0.452
4ia7BIVVitamin D3 receptor A/0.452
4kwhNAPReductase homolog/0.452
5cdsPFBAlcohol dehydrogenase E chain1.1.1.10.452
2d29FADAcyl-CoA dehydrogenase/0.451
2ob0ACON-alpha-acetyltransferase 50/0.451
2xw7NDPDihydrofolate reductase/0.451
3ha3SAHHydroxymycolate synthase MmaA42.1.10.451
3i1y33NBifunctional epoxide hydrolase 23.3.2.100.451
4m9aFDAAcyl-CoA dehydrogenase/0.451
1kc1NDPdTDP-4-dehydrorhamnose reductase1.1.1.1330.450
1kt3RTLRetinol-binding protein 4/0.450
1uuoBRFDihydroorotate dehydrogenase (quinone), mitochondrial1.3.5.20.450
4ceqQCHIntegrase/0.450
4f7iNAD3-isopropylmalate dehydrogenase1.1.1.850.450
4itfTFYVitamin D3 receptor/0.450
1trgCB3Thymidylate synthase/0.449
2ztlNADD(-)-3-hydroxybutyrate dehydrogenase/0.449
4an4DUDPutative glycosyl transferase/0.449
4g210VPVitamin D3 receptor A/0.449
4g67SAHUncharacterized ACR, COG1565 superfamily/0.449
4gh5NADShort-chain dehydrogenase/reductase SDR/0.449
4rupH97Vitamin D3 receptor A/0.449
5irnADPNucleotide binding oligomerization domain containing 2/0.449
5iubCLRAdenosine receptor A2a/0.449
1q20PLOSulfotransferase family cytosolic 2B member 12.8.2.20.448
1z7yAA5Cysteine synthase 12.5.1.470.448
2jn3JN3Fatty acid-binding protein, liver/0.448
3a783EVVitamin D3 receptor/0.448
3ha7B32Hydroxymycolate synthase MmaA42.1.10.448
4zj8SUVOrexin receptor type 1/0.448
1qrrUPGUDP-sulfoquinovose synthase, chloroplastic3.13.1.10.447
2hdhNADHydroxyacyl-coenzyme A dehydrogenase, mitochondrial1.1.1.350.447
2hziJINTyrosine-protein kinase ABL12.7.10.20.447
2yg4FADPutrescine oxidase/0.447
3kjsNAPBifunctional dihydrofolate reductase-thymidylate synthase/0.447
3pe2E1BCasein kinase II subunit alpha2.7.11.10.447
3zh8C58Protein kinase C iota type2.7.11.130.447
4fhh0U3Vitamin D3 receptor A/0.447
4g2h0VQVitamin D3 receptor A/0.447
4k4eK4ETankyrase-12.4.2.300.447
4wdb2AM2',3'-cyclic-nucleotide 3'-phosphodiesterase3.1.4.370.447
1obnASVIsopenicillin N synthase1.21.3.10.446
1qyxASDEstradiol 17-beta-dehydrogenase 11.1.1.620.446
1rkhVD2Vitamin D3 receptor/0.446
1y5rC0RCorticosteroid 11-beta-dehydrogenase isozyme 11.1.1.1460.446
2iygFMNAppA, antirepressor of ppsR, sensor of blue light/0.446
3d3wNAPL-xylulose reductase1.1.1.100.446
3oqkS52Renin3.4.23.150.446
3vtbTKAVitamin D3 receptor/0.446
4ewn0VRImidazole glycerol phosphate synthase subunit HisF4.1.30.446
4g95OAGDihydrofolate reductase1.5.1.30.446
4lt63ATPoly(A) polymerase gamma2.7.7.190.446
1bil0IURenin3.4.23.150.445
1fndA2PFerredoxin--NADP reductase, chloroplastic1.18.1.20.445
1ie8KH1Vitamin D3 receptor/0.445
1opbRETRetinol-binding protein 2/0.445
2pswCOAN-alpha-acetyltransferase 50/0.445
2rqfJH3Hemolymph juvenile hormone binding protein/0.445
2xvfFADPutative flavin-containing monooxygenase/0.445
3dr1C5DVitamin D3 receptor A/0.445
3ekuCY9Actin-5C/0.445
3gfbNADL-threonine 3-dehydrogenase/0.445
3jqpA2PFerredoxin--NADP reductase, apicoplast/0.445
3q7dNPXProstaglandin G/H synthase 21.14.99.10.445
4bcrWY1Peroxisome proliferator-activated receptor alpha/0.445
4hzoCOAConserved hypthetical protein/0.445
4irnFADAnaB/0.445
4u2lSFDCholesterol oxidase1.1.3.60.445
4wuoNAD3-isopropylmalate dehydrogenase1.1.1.850.445
4z5wILE_THR_GLN_TYS_TYSPhytosulfokine receptor 12.7.11.10.445
1i24UPGUDP-sulfoquinovose synthase, chloroplastic3.13.1.10.444
1siqFADGlutaryl-CoA dehydrogenase, mitochondrial1.3.8.60.444
1x8lOXRRetinol dehydratase/0.444
2zb8IMNProstaglandin reductase 21.3.1.480.444
3a9wNADNDP-sugar epimerase/0.444
3bhiNAPCarbonyl reductase [NADPH] 11.1.1.1840.444
3d8bADPFidgetin-like protein 13.6.40.444
3dheANDEstradiol 17-beta-dehydrogenase 11.1.1.620.444
3gqoAPRNon-structural polyprotein/0.444
3vdqNAD3-hydroxybutyrate dehydrogenase/0.444
3vrwYS5Vitamin D3 receptor/0.444
3w0jT08Vitamin D3 receptor/0.444
4eqwCOACoenzyme A disulfide reductase/0.444
4ge70K5Kynurenine/alpha-aminoadipate aminotransferase, mitochondrial2.6.1.390.444
4iarERM5-hydroxytryptamine receptor 1B/0.444
1d4pBPPProthrombin3.4.21.50.443
1fm4DXCMajor pollen allergen Bet v 1-L/0.443
1mq4ADPAurora kinase A2.7.11.10.443
1tl7FOKAdenylate cyclase type 2/0.443
1tl7FOKAdenylate cyclase type 5/0.443
2h2qNAPBifunctional dihydrofolate reductase-thymidylate synthase1.5.1.30.443
2hasC3OVitamin D3 receptor/0.443
2z3uCRRCytochrome P450/0.443
3h3sH15Collagen type IV alpha-3-binding protein/0.443
3uicNADEnoyl-[acyl-carrier-protein] reductase [NADH]/0.443
3w5q3KLVitamin D3 receptor/0.443
4cj4S3GIntegrase/0.443
4k4fK4FTankyrase-12.4.2.300.443
4zukNADAlpha-aminoadipic semialdehyde dehydrogenase1.2.1.310.443
1crbRTLRetinol-binding protein 1/0.442
1db1VDXVitamin D3 receptor/0.442
1dr3TAPDihydrofolate reductase1.5.1.30.442
1v35NAIEnoyl-ACP reductase/0.442
1v9aSAHUncharacterized protein/0.442
1yb5NAPQuinone oxidoreductase1.6.5.50.442
2b3dFADModulator of drug activity B/0.442
2fk8SAMHydroxymycolate synthase MmaA42.1.10.442
2vbdV10Isopenicillin N synthase1.21.3.10.442
3ajrNADNDP-sugar epimerase/0.442
3caqNDP3-oxo-5-beta-steroid 4-dehydrogenase/0.442
3maaFKPAdenylate cyclase type 2/0.442
3maaFKPAdenylate cyclase type 5/0.442
3of2NADEnoyl-[acyl-carrier-protein] reductase [NADH]1.3.1.90.442
3vtdTKDVitamin D3 receptor/0.442
4b2gV1NUncharacterized protein/0.442
4geb0LDKynurenine/alpha-aminoadipate aminotransferase, mitochondrial2.6.1.390.442
4qe6JN3Bile acid receptor/0.442
4tuvCPZCytochrome P450 1191.140.442
5cb5APRO-acetyl-ADP-ribose deacetylase/0.442
1culFOKAdenylate cyclase type 2/0.441
1culFOKAdenylate cyclase type 5/0.441
1e8hADPVanillyl-alcohol oxidase1.1.3.380.441
1emdNADMalate dehydrogenase/0.441
1poxFADPyruvate oxidase1.2.3.30.441
1rsgFADPolyamine oxidase FMS1/0.441
2gvdFKPAdenylate cyclase type 2/0.441
2gvdFKPAdenylate cyclase type 5/0.441
3a6qFMNFMN-binding protein/0.441
3ijdC2FMethylenetetrahydrofolate reductase/0.441
3r4oFU3Heat shock protein HSP 90-alpha/0.441
3vruYS3Vitamin D3 receptor/0.441
4abkAR6Poly [ADP-ribose] polymerase 142.4.2.300.441
4eb4D16Thymidylate synthase2.1.1.450.441
4fmxCNL1,8-cineole 2-endo-monooxygenase1.14.13.1560.441
4go2TAPCytosolic 10-formyltetrahydrofolate dehydrogenase1.5.1.60.441
4jdaA9SAbscisic acid receptor PYL3/0.441
4nfhPFBAlcohol dehydrogenase E chain1.1.1.10.441
4z24FADPutative GMC-type oxidoreductase R13510.441
5idwNAPShort-chain dehydrogenase/reductase SDR/0.441
1equEQIEstradiol 17-beta-dehydrogenase 11.1.1.620.440
1ib0NADNADH-cytochrome b5 reductase 31.6.2.20.440
1kboFADNAD(P)H dehydrogenase [quinone] 11.6.5.20.440
1kr2TADNicotinamide/nicotinic acid mononucleotide adenylyltransferase 12.7.7.10.440
3csdEMOPutative ketoacyl reductase1.3.10.440
3ha5SFGHydroxymycolate synthase MmaA42.1.10.440
3ta0ATPNitrogen regulatory protein P-II (GlnB-3)/0.440
3vt3VDXVitamin D3 receptor/0.440
4at0FADPossible succinate dehydrogenase/0.440
4o71CPBBromodomain-containing protein 4/0.440
5kj1PFBAlcohol dehydrogenase E chain1.1.1.10.440