2.200 Å
X-ray
2011-07-11
Name: | Methylketone synthase I |
---|---|
ID: | E0YCS2_SOLHA |
AC: | E0YCS2 |
Organism: | Lycopersicon hirsutum f. glabratum |
Reign: | Eukaryota |
TaxID: | 283673 |
EC Number: | / |
Chain Name: | Percentage of Residues within binding site |
---|---|
A | 100 % |
B-Factor: | 20.280 |
---|---|
Number of residues: | 23 |
Including | |
Standard Amino Acids: | 23 |
Non Standard Amino Acids: | 0 |
Water Molecules: | 0 |
Cofactors: | |
Metals: |
Ligandability | Volume (Å3) |
---|---|
1.671 | 1076.625 |
% Hydrophobic | % Polar |
---|---|
59.25 | 40.75 |
According to VolSite |
HET Code: | 3HO |
---|---|
Formula: | C8H15O3 |
Molecular weight: | 159.203 g/mol |
DrugBank ID: | - |
Buried Surface Area: | 54.78 % |
Polar Surface area: | 60.36 Å2 |
Number of | |
---|---|
H-Bond Acceptors: | 3 |
H-Bond Donors: | 1 |
Rings: | 0 |
Aromatic rings: | 0 |
Anionic atoms: | 1 |
Cationic atoms: | 0 |
Rule of Five Violation: | 0 |
Rotatable Bonds: | 6 |
X | Y | Z |
---|---|---|
19.2665 | -5.41855 | 0.870364 |
Represent the protein/ligand binding mode, centered on the ligand
Dashed lines represents hydrogen bonds and metal interactions
Green residue labels for amino acids with hydrophobic contacts (green lines) to the ligand
Ligand | Protein | Interaction | |||
---|---|---|---|---|---|
Atom | Atom | Residue | Distance (Å) | Angle (°) | Type |
O2 | OG1 | THR- 18 | 2.63 | 167.18 | H-Bond (Protein Donor) |
C2 | CB | ALA- 87 | 4.24 | 0 | Hydrophobic |
C3 | CB | LEU- 88 | 4 | 0 | Hydrophobic |
C5 | CD1 | LEU- 88 | 3.92 | 0 | Hydrophobic |
C5 | CB | ALA- 128 | 4.29 | 0 | Hydrophobic |
C2 | CG2 | VAL- 132 | 4.43 | 0 | Hydrophobic |
C4 | CG2 | VAL- 132 | 3.73 | 0 | Hydrophobic |
C6 | CG2 | VAL- 132 | 4.49 | 0 | Hydrophobic |
C7 | CD2 | LEU- 183 | 4.25 | 0 | Hydrophobic |
C8 | CD2 | LEU- 185 | 4.02 | 0 | Hydrophobic |
O2 | NE2 | HIS- 243 | 2.78 | 161.15 | H-Bond (Protein Donor) |