2.600 Å
X-ray
2000-09-20
Name: | Vanillyl-alcohol oxidase |
---|---|
ID: | VAOX_PENSI |
AC: | P56216 |
Organism: | Penicillium simplicissimum |
Reign: | Eukaryota |
TaxID: | 69488 |
EC Number: | 1.1.3.38 |
Chain Name: | Percentage of Residues within binding site |
---|---|
B | 100 % |
B-Factor: | 37.524 |
---|---|
Number of residues: | 35 |
Including | |
Standard Amino Acids: | 35 |
Non Standard Amino Acids: | 0 |
Water Molecules: | 0 |
Cofactors: | |
Metals: |
Ligandability | Volume (Å3) |
---|---|
0.995 | 1579.500 |
% Hydrophobic | % Polar |
---|---|
45.30 | 54.70 |
According to VolSite |
HET Code: | ADP |
---|---|
Formula: | C10H12N5O10P2 |
Molecular weight: | 424.177 g/mol |
DrugBank ID: | - |
Buried Surface Area: | 64.76 % |
Polar Surface area: | 260.7 Å2 |
Number of | |
---|---|
H-Bond Acceptors: | 14 |
H-Bond Donors: | 3 |
Rings: | 3 |
Aromatic rings: | 2 |
Anionic atoms: | 3 |
Cationic atoms: | 0 |
Rule of Five Violation: | 1 |
Rotatable Bonds: | 6 |
X | Y | Z |
---|---|---|
89.8213 | 39.8755 | 38.7309 |
Represent the protein/ligand binding mode, centered on the ligand
Dashed lines represents hydrogen bonds and metal interactions
Green residue labels for amino acids with hydrophobic contacts (green lines) to the ligand
Ligand | Protein | Interaction | |||
---|---|---|---|---|---|
Atom | Atom | Residue | Distance (Å) | Angle (°) | Type |
C3' | CG2 | ILE- 100 | 4.46 | 0 | Hydrophobic |
O2A | N | SER- 101 | 3.31 | 149.54 | H-Bond (Protein Donor) |
N7 | OG | SER- 101 | 2.71 | 138.73 | H-Bond (Protein Donor) |
O1A | N | ILE- 102 | 3.39 | 143.22 | H-Bond (Protein Donor) |
O1A | N | GLY- 103 | 2.56 | 133.88 | H-Bond (Protein Donor) |
O3B | N | ARG- 104 | 3.07 | 136.7 | H-Bond (Protein Donor) |
O2B | N | SER- 175 | 3.04 | 152.02 | H-Bond (Protein Donor) |
C4' | CG | GLU- 182 | 3.83 | 0 | Hydrophobic |
N1 | N | VAL- 262 | 2.67 | 148.36 | H-Bond (Protein Donor) |