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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
5idw NAP Short-chain dehydrogenase/reductase SDR

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity
Align
5idw NAPShort-chain dehydrogenase/reductase SDR / 1.466
4z3d NDPCarbonyl reductase [NADPH] 1 1.1.1.184 1.006
3gy0 NAPNAD(P)-dependent oxidoreductase / 0.932
1sny NAPLD36273p / 0.921
3bhi NAPCarbonyl reductase [NADPH] 1 1.1.1.184 0.918
3pgx NADUncharacterized NAD-dependent oxidoreductase MAP_4146 / 0.902
3tn7 NJPShort-chain alcohol dehydrogenase / 0.897
1g0n NDPTetrahydroxynaphthalene reductase 1.1.1.252 0.893
4o0l NDPNADPH-dependent 3-quinuclidinone reductase / 0.892
4fj0 NAP17beta-hydroxysteroid dehydrogenase / 0.871
3l77 NJPShort-chain alcohol dehydrogenase / 0.870
3iah NAPPutative oxoacyl-(Acyl carrier protein) reductase / 0.846
3o26 NDPSalutaridine reductase / 0.835
2jah NDPClavaldehyde dehydrogenase / 0.831
4fj1 NAP17beta-hydroxysteroid dehydrogenase / 0.831
3rj9 NADAlcohol dehydrogenase 1.1.1.1 0.828
1geg NADDiacetyl reductase [(S)-acetoin forming] 1.1.1.304 0.825
4pvd NDPNADPH-dependent methylglyoxal reductase GRE2 / 0.824
3wds NADNADH-dependent quinuclidinone reductase / 0.820
1vl8 NAPOxidoreductase, short chain dehydrogenase/reductase family / 0.809
3qwf NAP17beta-hydroxysteroid dehydrogenase / 0.807
4bms NAPAlclohol dehydrogenase/short-chain dehydrogenase / 0.805
1fdu NAPEstradiol 17-beta-dehydrogenase 1 1.1.1.62 0.803
1h5q NAPNADP-dependent mannitol dehydrogenase 1.1.1.138 0.803
3sx2 NADUncharacterized protein / 0.803
3s55 NADPutative short-chain dehydrogenase/reductase / 0.800
1nff NAD3-alpha-(or 20-beta)-hydroxysteroid dehydrogenase 1.1.1.53 0.798
1xg5 NAPDehydrogenase/reductase SDR family member 11 / 0.798
5jsf NAD17-beta-hydroxysteroid dehydrogenase 14 1.1.1 0.798
4nbt NAD3-oxoacyl-[acyl-carrier-protein] reductase / 0.797
4bmv NAPShort-chain dehydrogenase / 0.796
4dc0 NDPPutative ketoacyl reductase 1.3.1 0.796
1nfr NAD3-alpha-(or 20-beta)-hydroxysteroid dehydrogenase 1.1.1.53 0.795
2hrb NAPCarbonyl reductase [NADPH] 3 1.1.1.184 0.795
1gee NADGlucose 1-dehydrogenase 1.1.1.47 0.794
2gdz NAD15-hydroxyprostaglandin dehydrogenase [NAD(+)] 1.1.1.141 0.792
3o4r NAPDehydrogenase/reductase SDR family member 4 1.1.1.184 0.791
1b2l NDCAlcohol dehydrogenase 1.1.1.1 0.789
4fj2 NAP17beta-hydroxysteroid dehydrogenase / 0.789
3rj5 NADAlcohol dehydrogenase 1.1.1.1 0.788
3tox NAPPutative oxidoreductase / 0.788
4hp8 NAP2-deoxy-D-gluconate 3-dehydrogenase / 0.788
1n7g NDPGDP-mannose 4,6 dehydratase 2 4.2.1.47 0.787
2o23 NAD3-hydroxyacyl-CoA dehydrogenase type-2 1.1.1.35 0.787
1u7t TDT3-hydroxyacyl-CoA dehydrogenase type-2 1.1.1.35 0.785
2c29 NAPDihydroflavonol 4-reductase / 0.784
4dc1 NDPPutative ketoacyl reductase 1.3.1 0.783
1b15 NAEAlcohol dehydrogenase 1.1.1.1 0.782
1n5d NDPCarbonyl reductase [NADPH] 1 / 0.782
3w8e NAD3-hydroxybutyrate dehydrogenase / 0.780
4i5e NAPAlclohol dehydrogenase/short-chain dehydrogenase / 0.780
1gco NADGlucose 1-dehydrogenase 1.1.1.47 0.778
2dkn NAI3-alpha-hydroxysteroid dehydrogenase / 0.778
2ztm NADD(-)-3-hydroxybutyrate dehydrogenase / 0.777
3a28 NADL-2,3-butanediol dehydrogenase 1.1.1.76 0.777
1e3s NAD3-hydroxyacyl-CoA dehydrogenase type-2 1.1.1.35 0.775
2d1y NADOxidoreductase, short-chain dehydrogenase/reductase family / 0.773
1x7g NAPPutative ketoacyl reductase 1.3.1 0.772
1edo NAP3-oxoacyl-[acyl-carrier-protein] reductase 1, chloroplastic 1.1.1.100 0.771
3ruc NADUDP-N-acetylglucosamine 4-epimerase / 0.768
1mg5 NAIAlcohol dehydrogenase 1.1.1.1 0.766
1pr9 NAPL-xylulose reductase 1.1.1.10 0.765
5js6 NAD17-beta-hydroxysteroid dehydrogenase 14 1.1.1 0.765
3ru7 NADUDP-N-acetylglucosamine 4-epimerase / 0.764
3ru9 NADUDP-N-acetylglucosamine 4-epimerase / 0.764
1b16 NAQAlcohol dehydrogenase 1.1.1.1 0.763
1hdo NAPFlavin reductase (NADPH) / 0.763
3ruh NADUDP-N-acetylglucosamine 4-epimerase / 0.763
1w4z NAPPutative ketoacyl reductase 1.3.1 0.762
3vdq NAD3-hydroxybutyrate dehydrogenase / 0.762
4hbg NDP3-oxoacyl-[acyl-carrier-protein] reductase 1.1.1.100 0.762
2bd0 NAPSepiapterin reductase / 0.761
4nbu NAI3-oxoacyl-(Acyl-carrier-protein) reductase / 0.761
2ztu NADD(-)-3-hydroxybutyrate dehydrogenase / 0.759
2q1w NADPutative nucleotide sugar epimerase/ dehydratase / 0.758
3tsc NADUncharacterized protein / 0.757
4kwh NAPReductase homolog / 0.757
3mje NDPAmphB / 0.756
3ai2 NDPNADPH-sorbose reductase / 0.755
4b79 NADProbable short-chain dehydrogenase / 0.755
1e3w NAD3-hydroxyacyl-CoA dehydrogenase type-2 1.1.1.35 0.754
2p5y NADUDP-glucose 4-epimerase / 0.752
4gh5 NADShort-chain dehydrogenase/reductase SDR / 0.752
1rwb NADGlucose 1-dehydrogenase 1.1.1.47 0.751
5ig2 NADShort-chain dehydrogenase/reductase SDR / 0.751
1e6w NAD3-hydroxyacyl-CoA dehydrogenase type-2 1.1.1.35 0.748
3geg NADShort-chain dehydrogenase/reductase SDR / 0.746
1oaa NAPSepiapterin reductase 1.1.1.153 0.745
2ztv NADD(-)-3-hydroxybutyrate dehydrogenase / 0.745
4m87 NADEnoyl-[acyl-carrier-protein] reductase [NADH] / 0.745
2b37 NADEnoyl-[acyl-carrier-protein] reductase [NADH] 1.3.1.9 0.744
1qyv NAPEstradiol 17-beta-dehydrogenase 1 1.1.1.62 0.743
1iy8 NADLevodione reductase / 0.741
4k6f NAPPutative Acetoacetyl-CoA reductase / 0.741
3ruf NADUDP-N-acetylglucosamine 4-epimerase / 0.740
1kvr NADUDP-glucose 4-epimerase 5.1.3.2 0.739
2ztl NADD(-)-3-hydroxybutyrate dehydrogenase / 0.739
2bgm NAJSecoisolariciresinol dehydrogenase 1.1.1.331 0.737
3rua NADUDP-N-acetylglucosamine 4-epimerase / 0.737
3sju NDPKeto reductase / 0.736
4yag NAIC alpha-dehydrogenase / 0.736
4yai NAIC alpha-dehydrogenase / 0.736
1nyt NAPShikimate dehydrogenase (NADP(+)) / 0.735
2y99 NADCis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase 1.3.1.56 0.734
3rku NAPNADP-dependent 3-hydroxy acid dehydrogenase / 0.734
4hwk NAPSepiapterin reductase 1.1.1.153 0.734
2aqk NAIEnoyl-[acyl-carrier-protein] reductase [NADH] 1.3.1.9 0.731
1sby NADAlcohol dehydrogenase 1.1.1.1 0.730
4j7x NAPSepiapterin reductase 1.1.1.153 0.730
5jla NADPutative short-chain dehydrogenase/reductase / 0.729
1xkq NDPUncharacterized protein / 0.728
4zju NADEnoyl-[acyl-carrier-protein] reductase [NADH] / 0.728
1g6k NADGlucose 1-dehydrogenase 1.1.1.47 0.727
3p19 NDPPutative blue fluorescent protein / 0.727
1n7h NDPGDP-mannose 4,6 dehydratase 2 4.2.1.47 0.726
5jyd NADShort chain dehydrogenase / 0.726
4is3 NAD3alpha-hydroxy bile acid-CoA-ester 3-dehydrogenase 2 1.17.98.1 0.725
1zem NADXylitol dehydrogenase / 0.724
3w8d NAD3-hydroxybutyrate dehydrogenase / 0.724
4wec NADShort chain dehydrogenase / 0.724
2yut NAPPutative short-chain oxidoreductase / 0.723
4qed NAPElxO / 0.723
1xse NDPCorticosteroid 11-beta-dehydrogenase isozyme 1 1.1.1.146 0.722
2dte NAIGlucose 1-dehydrogenase related protein / 0.722
3d3w NAPL-xylulose reductase 1.1.1.10 0.722
3w8f NAD3-hydroxybutyrate dehydrogenase / 0.721
4dbz NDPPutative ketoacyl reductase 1.3.1 0.720
4fda NAP3-oxoacyl-[acyl-carrier-protein] reductase 1.1.1.100 0.720
3qrw NDPPutative ketoacyl reductase 1.3.1 0.719
3uce NDPDehydrogenase / 0.719
3rud NADUDP-N-acetylglucosamine 4-epimerase / 0.718
2q1s NAIPutative nucleotide sugar epimerase/ dehydratase / 0.716
3r3s NADPutative oxidoreductase / 0.716
4ccq NAPThioredoxin reductase / 0.714
5cpb NADEnoyl-[acyl-carrier-protein] reductase [NADH] 1.3.1.9 0.714
1x7h NDPPutative ketoacyl reductase 1.3.1 0.713
3rue NADUDP-N-acetylglucosamine 4-epimerase / 0.713
4fn4 NADShort chain dehydrogenase / 0.713
1bdb NADCis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase / 0.712
1orr NADCDP-paratose 2-epimerase / 0.712
3ndr NADPyridoxal 4-dehydrogenase 1.1.1.107 0.712
2q2v NADBeta-D-hydroxybutyrate dehydrogenase / 0.711
3ak4 NADNADH-dependent quinuclidinone reductase / 0.710
4rf2 NAPNADPH dependent R-specific alcohol dehydrogenase / 0.710
1t2a NDPGDP-mannose 4,6 dehydratase 4.2.1.47 0.709
3uic NADEnoyl-[acyl-carrier-protein] reductase [NADH] / 0.709
4eso NAPPutative oxidoreductase / 0.709
4j7u NAPSepiapterin reductase 1.1.1.153 0.709
4cql NADEstradiol 17-beta-dehydrogenase 8 1.1.1.62 0.708
3aut NAIGlucose 1-dehydrogenase 4 1.1.1.47 0.707
3s5w NAPL-ornithine N(5)-monooxygenase / 0.707
3sj7 NDP3-oxoacyl-(Acyl-carrier-protein) reductase, putative / 0.706
1ipe NDPTropinone reductase 2 1.1.1.236 0.705
2ntj P1HEnoyl-[acyl-carrier-protein] reductase [NADH] 1.3.1.9 0.705
2pzj NADPutative nucleotide sugar epimerase/ dehydratase / 0.705
4u7w NDPMxaA / 0.705
3f1k NAPUncharacterized oxidoreductase YciK 1 0.703
3phi NDPShikimate dehydrogenase (NADP(+)) / 0.703
5lc1 NADL-threonine 3-dehydrogenase / 0.702
2q1t NADPutative nucleotide sugar epimerase/ dehydratase / 0.700
4fw8 NAI3-oxoacyl-(Acyl-carrier-protein) reductase / 0.700
2c59 NADGDP-mannose 3,5-epimerase 5.1.3.18 0.697
2b35 NADEnoyl-[acyl-carrier-protein] reductase [NADH] 1.3.1.9 0.696
1ae1 NAPTropinone reductase 1 / 0.695
2hk9 NAPShikimate dehydrogenase (NADP(+)) / 0.695
4idg NADPutative UDP-glucose 4-epimerase / 0.695
3lu1 NADUDP-N-acetylglucosamine 4-epimerase / 0.694
1cyd NDPCarbonyl reductase [NADPH] 2 1.1.1.184 0.693
1wp4 NDP3-hydroxyisobutyrate dehydrogenase / 0.693
1wvg APRCDP-glucose 4,6-dehydratase 4.2.1.45 0.693
2h9i EADEnoyl-[acyl-carrier-protein] reductase [NADH] 1.3.1.9 0.693
2wyv NADEnoyl-[acyl-carrier-protein] reductase [NADH] / 0.693
2bfo NDPPteridine reductase 1 1.5.1.33 0.692
3wmx NADNAD dependent epimerase/dehydratase / 0.692
1i3l NADUDP-glucose 4-epimerase / 0.691
3pef NAPGlyoxalate/3-oxopropanoate/4-oxobutanoate reductase / 0.691
3ko8 NADNAD-dependent epimerase/dehydratase / 0.690
2aqh NAIEnoyl-[acyl-carrier-protein] reductase [NADH] 1.3.1.9 0.687
1u7t NAD3-hydroxyacyl-CoA dehydrogenase type-2 1.1.1.35 0.686
1eny NADEnoyl-[acyl-carrier-protein] reductase [NADH] 1.3.1.9 0.685
3nug NADPyridoxal 4-dehydrogenase 1.1.1.107 0.685
4iqg NAPShort-chain dehydrogenase/reductase SDR / 0.685
1ahh NAD7-alpha-hydroxysteroid dehydrogenase 1.1.1.159 0.684
2b4q NAPRhamnolipids biosynthesis 3-oxoacyl-[acyl-carrier-protein] reductase 1.1.1.100 0.684
5koi NADEnoyl-[acyl-carrier-protein] reductase [NADH] / 0.684
2ieb ZIDEnoyl-[acyl-carrier-protein] reductase [NADH] 1.3.1.9 0.683
2z95 NDPGDP-mannose 4,6-dehydratase / 0.683
5b1y NDP3-oxoacyl-[acyl-carrier-protein] reductase / 0.683
2ie0 ZIDEnoyl-[acyl-carrier-protein] reductase [NADH] 1.3.1.9 0.682
2iyp A2P6-phosphogluconate dehydrogenase, decarboxylating 1.1.1.44 0.682
4bgi NADEnoyl-[acyl-carrier-protein] reductase [NADH] 1.3.1.9 0.682
2xlt NA0Putative flavin-containing monooxygenase / 0.678
3a9w NADNDP-sugar epimerase / 0.678
2ewm NAD(S)-1-Phenylethanol dehydrogenase 1.1.1.311 0.677
2idz ZIDEnoyl-[acyl-carrier-protein] reductase [NADH] 1.3.1.9 0.677
2x6t NAPADP-L-glycero-D-manno-heptose-6-epimerase / 0.677
2ydx NAPMethionine adenosyltransferase 2 subunit beta / 0.677
4gcm NAPThioredoxin reductase 1.8.1.9 0.677
2ggs NDPdTDP-4-dehydrorhamnose reductase / 0.676
2p5u NADUDP-glucose 4-epimerase / 0.676
4fc7 NAPPeroxisomal 2,4-dienoyl-CoA reductase 1.3.1.34 0.674
4qec NAPElxO / 0.674
2jl1 NAPTriphenylmethane reductase / 0.673
2zat NAPDehydrogenase/reductase SDR family member 4 1.1.1.184 0.673
3icp NADNAD-dependent epimerase/dehydratase / 0.673
2yy7 NADL-threonine dehydrogenase / 0.672
3h4v NAPPteridine reductase 1 1.5.1.33 0.672
4dqu NAIEnoyl-[acyl-carrier-protein] reductase [NADH] 1.3.1.9 0.672
1b14 NADAlcohol dehydrogenase 1.1.1.1 0.671
1rpn NDPGDP-mannose 4,6-dehydratase / 0.670
3lzx NAPFerredoxin--NADP reductase 2 1.18.1.2 0.670
1rkx NADCDP-D-glucose-4,6-dehydratase / 0.668
2c54 NADGDP-mannose 3,5-epimerase 5.1.3.18 0.668
3lzw NAPFerredoxin--NADP reductase 2 1.18.1.2 0.668
4clo NAPPteridine reductase / 0.668
1eq2 NAPADP-L-glycero-D-manno-heptose-6-epimerase / 0.667
1g1a NADdTDP-glucose 4,6-dehydratase / 0.667
1w8d NAP2,4-dienoyl-CoA reductase, mitochondrial 1.3.1.34 0.667
2jkv NAP6-phosphogluconate dehydrogenase, decarboxylating 1.1.1.44 0.667
1n2s NAIdTDP-4-dehydrorhamnose reductase 1.1.1.133 0.666
2nnl NAPDihydroflavonol 4-reductase 1.1.1.219 0.666
4dmm NAP3-oxoacyl-[acyl-carrier-protein] reductase / 0.666
5d2e NAPMlnE / 0.666
4tqg NDPPutative dTDP-d-glucose 4 6-dehydratase / 0.664
2nv6 ZIDEnoyl-[acyl-carrier-protein] reductase [NADH] 1.3.1.9 0.663
3g49 NAPCorticosteroid 11-beta-dehydrogenase isozyme 1 1.1.1.146 0.663
4cnz ADPNitrogen regulatory protein P-II 1 / 0.663
1fk8 NAD3-alpha-hydroxysteroid dehydrogenase/carbonyl reductase 1.1.1.50 0.661
5a04 NDPGlucose-fructose oxidoreductase / 0.661
4e5y NDPGDP-L-fucose synthase 1.1.1.271 0.660
1h6a NDPGlucose--fructose oxidoreductase 1.1.99.28 0.659
2ev9 NAPShikimate dehydrogenase (NADP(+)) / 0.659
2hk9 ATRShikimate dehydrogenase (NADP(+)) / 0.659
3orf NADDihydropteridine reductase 1.5.1.34 0.658
4ej0 NAPADP-L-glycero-D-manno-heptose-6-epimerase / 0.658
2pk3 A2RGDP-6-deoxy-D-mannose reductase / 0.657
3h2s NDPPutative NADH-flavin reductase / 0.657
5a06 NDPGlucose-fructose oxidoreductase / 0.657
1nai NADUDP-glucose 4-epimerase 5.1.3.2 0.656
3ajr NADNDP-sugar epimerase / 0.656
1vrw NAIEnoyl-ACP reductase / 0.655
3aw9 NADNAD-dependent epimerase/dehydratase / 0.655
3lqf NADGalactitol dehydrogenase / 0.655
3qfc NAPNADPH--cytochrome P450 reductase / 0.655
4dre NAIEnoyl-[acyl-carrier-protein] reductase [NADH] 1.3.1.9 0.655
4gll NADUDP-glucuronic acid decarboxylase 1 4.1.1.35 0.654
2q0k NAPThioredoxin reductase 1.8.1.9 0.653
3o03 NAPDehydrogenase with different specificities (Related to short-chain alcohol dehydrogenase) / 0.653
4a5l NDPThioredoxin reductase / 0.652
4to4 DGTDeoxynucleoside triphosphate triphosphohydrolase SAMHD1 3.1.5 0.652
2hun NAD336aa long hypothetical dTDP-glucose 4,6-dehydratase / 0.651
4nbw NADShort-chain dehydrogenase/reductase SDR / 0.651
4oqy NDP(S)-imine reductase / 0.651