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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
5a02 NAP Glucose-fructose oxidoreductase

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
5a02 NAPGlucose-fructose oxidoreductase / 1.418
5a06 NDPGlucose-fructose oxidoreductase / 1.359
5a04 NDPGlucose-fructose oxidoreductase / 1.343
5a05 NDPGlucose-fructose oxidoreductase / 1.319
5a03 NDPGlucose-fructose oxidoreductase / 1.304
1h6c NDPGlucose--fructose oxidoreductase 1.1.99.28 1.252
1h6d NDPGlucose--fructose oxidoreductase 1.1.99.28 1.180
1h6a NDPGlucose--fructose oxidoreductase 1.1.99.28 1.144
1ryd NDPGlucose--fructose oxidoreductase 1.1.99.28 1.111
1h6b NDPGlucose--fructose oxidoreductase 1.1.99.28 1.104
1ofg NDPGlucose--fructose oxidoreductase 1.1.99.28 1.050
1evj NADGlucose--fructose oxidoreductase 1.1.99.28 1.000
1zh8 NAPUncharacterized protein / 0.922
2glx NDP1,5-anhydro-D-fructose reductase / 0.871
2ixa NADAlpha-N-acetylgalactosaminidase 3.2.1.49 0.846
3q2k NAIProbable oxidoreductase / 0.835
2ixb NADAlpha-N-acetylgalactosaminidase 3.2.1.49 0.834
1rye NDPGlucose--fructose oxidoreductase 1.1.99.28 0.788
3o9z NADLipopolysaccaride biosynthesis protein wbpB / 0.759
3oa2 NADUDP-N-acetyl-2-amino-2-deoxy-D-glucuronate oxidase / 0.751
1yqd NAPSinapyl alcohol dehydrogenase / 0.746
1r37 NADNAD-dependent alcohol dehydrogenase 1.1.1.1 0.728
2q3e NAIUDP-glucose 6-dehydrogenase 1.1.1.22 0.727
1axe NADAlcohol dehydrogenase E chain 1.1.1.1 0.724
3cea NADMyo-inositol 2-dehydrogenase-like (Promiscuous) / 0.719
2f1k NAPPrephenate dehydrogenase / 0.713
3two NDPMannitol dehydrogenase / 0.712
1nvm NADAcetaldehyde dehydrogenase 1.2.1.10 0.709
3f3s NADLambda-crystallin homolog / 0.707
3keo NADRedox-sensing transcriptional repressor Rex / 0.706
3h3j NADL-lactate dehydrogenase 1 1.1.1.27 0.705
2h63 NAPBiliverdin reductase A 1.3.1.24 0.703
1f0y NADHydroxyacyl-coenzyme A dehydrogenase, mitochondrial 1.1.1.35 0.702
4nfs NAJAlcohol dehydrogenase E chain 1.1.1.1 0.702
5kj1 NAJAlcohol dehydrogenase E chain 1.1.1.1 0.701
3rbv NAPSugar 3-ketoreductase / 0.698
4gmg NAPYersiniabactin biosynthetic protein YbtU / 0.697
2voj NADAlanine dehydrogenase 1.4.1.1 0.696
3ec7 NADInositol 2-dehydrogenase / 0.695
1yjq NAP2-dehydropantoate 2-reductase 1.1.1.169 0.694
1yqx NAPSinapyl alcohol dehydrogenase / 0.693
5bsg NAPPyrroline-5-carboxylate reductase / 0.691
2cvz NDP3-hydroxyisobutyrate dehydrogenase / 0.690
4c4o NADSADH / 0.686
2vhw NAIAlanine dehydrogenase 1.4.1.1 0.685
3d4p NADL-lactate dehydrogenase 1 1.1.1.27 0.685
3mvq NDPGlutamate dehydrogenase 1, mitochondrial 1.4.1.3 0.684
4gae NDP1-deoxy-D-xylulose 5-phosphate reductoisomerase, apicoplastic 1.1.1.267 0.684
4dlb NADS-(hydroxymethyl)glutathione dehydrogenase / 0.683
5kjf NAJAlcohol dehydrogenase E chain 1.1.1.1 0.683
3m2t NADProbable dehydrogenase / 0.682
3pef NAPGlyoxalate/3-oxopropanoate/4-oxobutanoate reductase / 0.682
3wle NAD(R)-specific carbonyl reductase / 0.681
1m76 NADHydroxyacyl-coenzyme A dehydrogenase, mitochondrial 1.1.1.35 0.680
1qr6 NADNAD-dependent malic enzyme, mitochondrial 1.1.1.38 0.680
2q3e UPGUDP-glucose 6-dehydrogenase 1.1.1.22 0.680
3nt2 NADInositol 2-dehydrogenase/D-chiro-inositol 3-dehydrogenase 1.1.1.18 0.680
3tdk UPGUDP-glucose 6-dehydrogenase 1.1.1.22 0.678
2yjz NAPMetalloreductase STEAP4 1.16.1 0.677
3pdu NAPGlyoxalate/3-oxopropanoate/4-oxobutanoate reductase / 0.677
5lc1 NADL-threonine 3-dehydrogenase / 0.676
5ein NAP[LysW]-L-2-aminoadipate 6-phosphate reductase / 0.675
1pj2 NAINAD-dependent malic enzyme, mitochondrial 1.1.1.38 0.674
2c29 NAPDihydroflavonol 4-reductase / 0.674
3x2f NAIAdenosylhomocysteinase / 0.674
4om8 NAD3-hydroxybutyryl-coA dehydrogenase / 0.674
4wji NAPPutative cyclohexadienyl dehydrogenase and ADH prephenate dehydrogenase / 0.674
1kc1 NDPdTDP-4-dehydrorhamnose reductase 1.1.1.133 0.672
1wp4 NDP3-hydroxyisobutyrate dehydrogenase / 0.672
2dt5 NADRedox-sensing transcriptional repressor Rex / 0.672
2vhv NAIAlanine dehydrogenase 1.4.1.1 0.672
3wbb NAPMeso-diaminopimelate D-dehydrogenase / 0.672
3cos NADAlcohol dehydrogenase 4 1.1.1.1 0.671
3wbf NAPMeso-diaminopimelate D-dehydrogenase / 0.671
1muu GDXGDP-mannose 6-dehydrogenase 1.1.1.132 0.670
2q1s NAIPutative nucleotide sugar epimerase/ dehydratase / 0.670
3wfj NAD2-dehydropantoate 2-reductase / 0.670
1mv8 GDXGDP-mannose 6-dehydrogenase 1.1.1.132 0.669
1wwk NAD307aa long hypothetical phosphoglycerate dehydrogenase / 0.669
4z3d NDPCarbonyl reductase [NADPH] 1 1.1.1.184 0.669
4c3s NADAldehyde Dehydrogenase / 0.668
1lj8 NADMannitol dehydrogenase / 0.667
1mgo NADAlcohol dehydrogenase E chain 1.1.1.1 0.667
3h2s NDPPutative NADH-flavin reductase / 0.667
4xgi NADGlutamate dehydrogenase / 0.666
4py0 6ATP2Y purinoceptor 12 / 0.665
1do8 NADNAD-dependent malic enzyme, mitochondrial 1.1.1.38 0.664
4y1b NAPAntE / 0.664
1q0q NDP1-deoxy-D-xylulose 5-phosphate reductoisomerase 1.1.1.267 0.663
2x6t NAPADP-L-glycero-D-manno-heptose-6-epimerase / 0.663
2vhx NADAlanine dehydrogenase 1.4.1.1 0.662
2yut NAPPutative short-chain oxidoreductase / 0.662
4e5n NADPhosphonate dehydrogenase 1.20.1.1 0.662
4idg NADPutative UDP-glucose 4-epimerase / 0.662
2vq3 NAPMetalloreductase STEAP3 / 0.661
1kvr NADUDP-glucose 4-epimerase 5.1.3.2 0.660
3w8d NAD3-hydroxybutyrate dehydrogenase / 0.660
4oaq NDPR-specific carbonyl reductase / 0.660
5hws NAP2-dehydropantoate 2-reductase / 0.660
1p0f NAPNADP-dependent alcohol dehydrogenase 1.1.1.2 0.659
2r6h FADNa(+)-translocating NADH-quinone reductase subunit F / 0.659
3had NADHydroxyacyl-coenzyme A dehydrogenase, mitochondrial 1.1.1.35 0.659
1heu NADAlcohol dehydrogenase E chain 1.1.1.1 0.658
1n7h GDPGDP-mannose 4,6 dehydratase 2 4.2.1.47 0.658
2gcq DOIAdenylosuccinate synthetase / 0.658
2hdh NADHydroxyacyl-coenzyme A dehydrogenase, mitochondrial 1.1.1.35 0.658
2j3k NAPNADPH-dependent oxidoreductase 2-alkenal reductase 1.3.1.74 0.658
2q2v NADBeta-D-hydroxybutyrate dehydrogenase / 0.658
1adb CNDAlcohol dehydrogenase E chain 1.1.1.1 0.657
1adc PADAlcohol dehydrogenase E chain 1.1.1.1 0.657
1nah NADUDP-glucose 4-epimerase 5.1.3.2 0.657
3kjr NAPBifunctional dihydrofolate reductase-thymidylate synthase / 0.657
4kqw NAPKetol-acid reductoisomerase (NADP(+)) / 0.657
1cf2 NAPGlyceraldehyde-3-phosphate dehydrogenase / 0.656
1t2d NADL-lactate dehydrogenase 1.1.1.27 0.656
1w4z NAPPutative ketoacyl reductase 1.3.1 0.656
2pzj NADPutative nucleotide sugar epimerase/ dehydratase / 0.656
3ggp NADPrephenate dehydrogenase / 0.656
1cyd NDPCarbonyl reductase [NADPH] 2 1.1.1.184 0.655
3ptz UDXUDP-glucose 6-dehydrogenase 1.1.1.22 0.655
4dxh NAJAlcohol dehydrogenase E chain 1.1.1.1 0.655
2dbr NAPGlyoxylate reductase 1.1.1.26 0.654
1yl7 NAI4-hydroxy-tetrahydrodipicolinate reductase / 0.653
2p5n NDPAldo-keto reductase family 1 member C21 1.1.1 0.653
3p19 NDPPutative blue fluorescent protein / 0.653
1hld NADAlcohol dehydrogenase E chain 1.1.1.1 0.652
1pjc NADAlanine dehydrogenase / 0.652
4dqw ATPInosine-5'-monophosphate dehydrogenase / 0.652
3kbo NDPGlyoxylate/hydroxypyruvate reductase A / 0.651
2czc NADGlyceraldehyde-3-phosphate dehydrogenase 1.2.1.59 0.650
2ggs NDPdTDP-4-dehydrorhamnose reductase / 0.650
3hwr NDP2-dehydropantoate 2-reductase / 0.650
4pxz CLRP2Y purinoceptor 12 / 0.650