2.200 Å
X-ray
2006-04-05
Name: | 1,5-anhydro-D-fructose reductase |
---|---|
ID: | AFR_ENSAD |
AC: | Q2I8V6 |
Organism: | Ensifer adhaerens |
Reign: | Bacteria |
TaxID: | 106592 |
EC Number: | / |
Chain Name: | Percentage of Residues within binding site |
---|---|
A | 2 % |
B | 98 % |
B-Factor: | 28.185 |
---|---|
Number of residues: | 40 |
Including | |
Standard Amino Acids: | 40 |
Non Standard Amino Acids: | 0 |
Water Molecules: | 0 |
Cofactors: | |
Metals: |
Ligandability | Volume (Å3) |
---|---|
0.399 | 634.500 |
% Hydrophobic | % Polar |
---|---|
45.74 | 54.26 |
According to VolSite |
HET Code: | NDP |
---|---|
Formula: | C21H26N7O17P3 |
Molecular weight: | 741.389 g/mol |
DrugBank ID: | DB02338 |
Buried Surface Area: | 61.77 % |
Polar Surface area: | 404.9 Å2 |
Number of | |
---|---|
H-Bond Acceptors: | 22 |
H-Bond Donors: | 5 |
Rings: | 5 |
Aromatic rings: | 2 |
Anionic atoms: | 4 |
Cationic atoms: | 0 |
Rule of Five Violation: | 2 |
Rotatable Bonds: | 13 |
X | Y | Z |
---|---|---|
-4.16269 | 32.0236 | 72.9239 |
Represent the protein/ligand binding mode, centered on the ligand
Dashed lines represents hydrogen bonds and metal interactions
Green residue labels for amino acids with hydrophobic contacts (green lines) to the ligand
Ligand | Protein | Interaction | |||
---|---|---|---|---|---|
Atom | Atom | Residue | Distance (Å) | Angle (°) | Type |
O2X | N | ALA- 9 | 2.85 | 160.88 | H-Bond (Protein Donor) |
C5D | CB | SER- 10 | 4.25 | 0 | Hydrophobic |
O2A | N | THR- 11 | 2.88 | 142.55 | H-Bond (Protein Donor) |
O2A | OG1 | THR- 11 | 2.68 | 162.37 | H-Bond (Protein Donor) |
O1N | N | ILE- 12 | 2.97 | 167.01 | H-Bond (Protein Donor) |
C5N | CB | ILE- 12 | 3.7 | 0 | Hydrophobic |
C5D | CG2 | ILE- 12 | 3.95 | 0 | Hydrophobic |
C4N | CD1 | ILE- 12 | 3.41 | 0 | Hydrophobic |
O1X | OG | SER- 33 | 2.61 | 158.82 | H-Bond (Protein Donor) |
O3X | OG1 | THR- 34 | 2.83 | 162.88 | H-Bond (Protein Donor) |
O3X | N | THR- 34 | 3.19 | 155.38 | H-Bond (Protein Donor) |
O1X | NH2 | ARG- 38 | 3.22 | 132.15 | H-Bond (Protein Donor) |
O1X | NE | ARG- 38 | 2.86 | 145.8 | H-Bond (Protein Donor) |
O1X | CZ | ARG- 38 | 3.45 | 0 | Ionic (Protein Cationic) |
DuAr | CZ | ARG- 38 | 3.68 | 168.49 | Pi/Cation |
C5B | CG2 | THR- 72 | 3.68 | 0 | Hydrophobic |
O3D | OD1 | ASN- 73 | 2.78 | 149.38 | H-Bond (Ligand Donor) |
C4D | CG | GLU- 93 | 4.11 | 0 | Hydrophobic |
N7N | OE1 | GLU- 93 | 2.88 | 147.76 | H-Bond (Ligand Donor) |
O2D | NZ | LYS- 94 | 3.08 | 153.44 | H-Bond (Protein Donor) |
O2D | O | LYS- 94 | 2.64 | 142.42 | H-Bond (Ligand Donor) |
C3N | CD | LYS- 94 | 4.17 | 0 | Hydrophobic |
O1A | NE1 | TRP- 162 | 3.19 | 152.39 | H-Bond (Protein Donor) |
C5D | CZ2 | TRP- 162 | 4.38 | 0 | Hydrophobic |
C3D | CH2 | TRP- 162 | 3.81 | 0 | Hydrophobic |
O2N | CZ | ARG- 163 | 3.57 | 0 | Ionic (Protein Cationic) |
O2N | NH2 | ARG- 163 | 3.25 | 142.14 | H-Bond (Protein Donor) |
O2N | NH1 | ARG- 163 | 3.02 | 156.27 | H-Bond (Protein Donor) |
O7N | OH | TYR- 283 | 2.54 | 162.18 | H-Bond (Protein Donor) |