1.500 Å
X-ray
2009-10-26
Name: | Redox-sensing transcriptional repressor Rex |
---|---|
ID: | REX_STRA3 |
AC: | Q8E565 |
Organism: | Streptococcus agalactiae serotype III |
Reign: | Bacteria |
TaxID: | 211110 |
EC Number: | / |
Chain Name: | Percentage of Residues within binding site |
---|---|
A | 75 % |
B | 25 % |
B-Factor: | 15.252 |
---|---|
Number of residues: | 42 |
Including | |
Standard Amino Acids: | 40 |
Non Standard Amino Acids: | 0 |
Water Molecules: | 2 |
Cofactors: | |
Metals: |
Ligandability | Volume (Å3) |
---|---|
0.488 | 317.250 |
% Hydrophobic | % Polar |
---|---|
40.43 | 59.57 |
According to VolSite |
HET Code: | NAD |
---|---|
Formula: | C21H26N7O14P2 |
Molecular weight: | 662.417 g/mol |
DrugBank ID: | - |
Buried Surface Area: | 65.75 % |
Polar Surface area: | 343.54 Å2 |
Number of | |
---|---|
H-Bond Acceptors: | 18 |
H-Bond Donors: | 6 |
Rings: | 5 |
Aromatic rings: | 3 |
Anionic atoms: | 2 |
Cationic atoms: | 1 |
Rule of Five Violation: | 3 |
Rotatable Bonds: | 11 |
X | Y | Z |
---|---|---|
35.6359 | 56.7367 | 45.8001 |
Represent the protein/ligand binding mode, centered on the ligand
Dashed lines represents hydrogen bonds and metal interactions
Green residue labels for amino acids with hydrophobic contacts (green lines) to the ligand
Ligand | Protein | Interaction | |||
---|---|---|---|---|---|
Atom | Atom | Residue | Distance (Å) | Angle (°) | Type |
O2A | N | ASN- 94 | 3.06 | 168.91 | H-Bond (Protein Donor) |
O1N | ND2 | ASN- 94 | 2.88 | 170.85 | H-Bond (Protein Donor) |
O2N | N | ILE- 95 | 2.99 | 157.83 | H-Bond (Protein Donor) |
C3N | CB | ILE- 95 | 4.01 | 0 | Hydrophobic |
C5D | CG2 | ILE- 95 | 4.01 | 0 | Hydrophobic |
N7N | O | ALA- 98 | 2.98 | 139.75 | H-Bond (Ligand Donor) |
C4N | CD2 | LEU- 99 | 4.1 | 0 | Hydrophobic |
C2D | CE1 | TYR- 102 | 4 | 0 | Hydrophobic |
C3N | CB | TYR- 102 | 3.82 | 0 | Hydrophobic |
DuAr | DuAr | TYR- 102 | 3.73 | 0 | Aromatic Face/Face |
O3B | OD1 | ASP- 117 | 2.8 | 169.68 | H-Bond (Ligand Donor) |
O2B | OD2 | ASP- 117 | 2.58 | 172.64 | H-Bond (Ligand Donor) |
C2B | CD1 | LEU- 118 | 4.45 | 0 | Hydrophobic |
C5B | CG | PRO- 157 | 3.78 | 0 | Hydrophobic |
O3D | OG | SER- 158 | 2.82 | 159.3 | H-Bond (Ligand Donor) |
O3D | OG | SER- 180 | 2.74 | 164.87 | H-Bond (Protein Donor) |
C5N | CD1 | LEU- 197 | 3.63 | 0 | Hydrophobic |
O2N | O | HOH- 225 | 2.74 | 167.37 | H-Bond (Protein Donor) |