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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3keo NAD Redox-sensing transcriptional repressor Rex

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
3keo NADRedox-sensing transcriptional repressor Rex / 1.114
3ket NADRedox-sensing transcriptional repressor Rex / 0.797
3adp NAILambda-crystallin 1.1.1.45 0.772
3f3s NADLambda-crystallin homolog / 0.761
3keq NADRedox-sensing transcriptional repressor Rex / 0.747
3ikt NADRedox-sensing transcriptional repressor Rex / 0.746
1r37 NADNAD-dependent alcohol dehydrogenase 1.1.1.1 0.739
3v1y NADGlyceraldehyde-3-phosphate dehydrogenase 1, cytosolic 1.2.1.12 0.728
4o59 NADGlyceraldehyde-3-phosphate dehydrogenase 1.2.1.12 0.728
4k9d NADGlyceraldehyde-3-phosphate dehydrogenase 1.2.1.12 0.721
2vhz NAIAlanine dehydrogenase 1.4.1.1 0.720
3lvf NADGlyceraldehyde-3-phosphate dehydrogenase 1 / 0.718
3hja NADGlyceraldehyde-3-phosphate dehydrogenase / 0.717
1h2b NAJNAD-dependent alcohol dehydrogenase / 0.716
3cmc NADGlyceraldehyde-3-phosphate dehydrogenase / 0.714
1gd1 NADGlyceraldehyde-3-phosphate dehydrogenase / 0.713
1hdg NADGlyceraldehyde-3-phosphate dehydrogenase / 0.713
1wp4 NDP3-hydroxyisobutyrate dehydrogenase / 0.712
3pef NAPGlyoxalate/3-oxopropanoate/4-oxobutanoate reductase / 0.711
1nqo NADGlyceraldehyde-3-phosphate dehydrogenase / 0.709
2q3e NAIUDP-glucose 6-dehydrogenase 1.1.1.22 0.708
3q2k NAIProbable oxidoreductase / 0.708
3x2f NAIAdenosylhomocysteinase / 0.707
5a02 NAPGlucose-fructose oxidoreductase / 0.706
1m76 NADHydroxyacyl-coenzyme A dehydrogenase, mitochondrial 1.1.1.35 0.704
3cif NADGlyceraldehyde-3-phosphate dehydrogenase / 0.704
3l4s NADGlyceraldehyde-3-phosphate dehydrogenase 1 / 0.704
4gae NDP1-deoxy-D-xylulose 5-phosphate reductoisomerase, apicoplastic 1.1.1.267 0.703
1f0y NADHydroxyacyl-coenzyme A dehydrogenase, mitochondrial 1.1.1.35 0.702
1yjq NAP2-dehydropantoate 2-reductase 1.1.1.169 0.701
3oet NADErythronate-4-phosphate dehydrogenase / 0.701
1dss NADGlyceraldehyde-3-phosphate dehydrogenase 1.2.1.12 0.700
5c7o NADGlyceraldehyde-3-phosphate dehydrogenase, testis-specific 1.2.1.12 0.697
1ywg NADGlyceraldehyde-3-phosphate dehydrogenase / 0.696
3qv1 NADGlyceraldehyde-3-phosphate dehydrogenase GAPA1, chloroplastic 1.2.1.13 0.696
1npt NADGlyceraldehyde-3-phosphate dehydrogenase / 0.695
3tri NAPPyrroline-5-carboxylate reductase / 0.695
1nvm NADAcetaldehyde dehydrogenase 1.2.1.10 0.694
2fzw NADAlcohol dehydrogenase class-3 1.1.1.1 0.692
3hwr NDP2-dehydropantoate 2-reductase / 0.692
3m2t NADProbable dehydrogenase / 0.692
3pym NADGlyceraldehyde-3-phosphate dehydrogenase 3 1.2.1.12 0.691
1nqa NADGlyceraldehyde-3-phosphate dehydrogenase / 0.690
1ht0 NADAlcohol dehydrogenase 1C 1.1.1.1 0.689
2i9p NAD3-hydroxyisobutyrate dehydrogenase, mitochondrial 1.1.1.31 0.689
2vhx NADAlanine dehydrogenase 1.4.1.1 0.689
2vhw NAIAlanine dehydrogenase 1.4.1.1 0.687
1u8f NADGlyceraldehyde-3-phosphate dehydrogenase 1.2.1.12 0.686
3ids NADGlyceraldehyde-3-phosphate dehydrogenase, glycosomal 1.2.1.12 0.686
5a03 NDPGlucose-fructose oxidoreductase / 0.686
4ng5 NAJAlcohol dehydrogenase E chain 1.1.1.1 0.685
2rcy NAPPyrroline-5-carboxylate reductase / 0.684
5a04 NDPGlucose-fructose oxidoreductase / 0.683
5ein NAP[LysW]-L-2-aminoadipate 6-phosphate reductase / 0.683
1m75 NADHydroxyacyl-coenzyme A dehydrogenase, mitochondrial 1.1.1.35 0.682
2ixa NADAlpha-N-acetylgalactosaminidase 3.2.1.49 0.682
2voj NADAlanine dehydrogenase 1.4.1.1 0.680
1j0x NADGlyceraldehyde-3-phosphate dehydrogenase 1.2.1.12 0.679
1vsv NADGlyceraldehyde-3-phosphate dehydrogenase / 0.679
3doc NADGlyceraldehyde-3-phosphate dehydrogenase / 0.678
4o63 NADGlyceraldehyde-3-phosphate dehydrogenase 1.2.1.12 0.677
1hsz NADAlcohol dehydrogenase 1B 1.1.1.1 0.675
2g5c NADPrephenate dehydrogenase / 0.675
3k2b NADGlyceraldehyde-3-phosphate dehydrogenase GAPA1, chloroplastic 1.2.1.13 0.674
1mp0 NADAlcohol dehydrogenase class-3 1.1.1.1 0.673
3b20 NADGlyceraldehyde-3-phosphate dehydrogenase / 0.673
1nbo NADGlyceraldehyde-3-phosphate dehydrogenase A, chloroplastic 1.2.1.13 0.672
1cf2 NAPGlyceraldehyde-3-phosphate dehydrogenase / 0.671
4dbv NDPGlyceraldehyde-3-phosphate dehydrogenase / 0.670
4om8 NAD3-hydroxybutyryl-coA dehydrogenase / 0.670
3jv7 NADSecondary alcohol dehydrogenase / 0.669
3n7u NADFormate dehydrogenase, chloroplastic/mitochondrial / 0.669
3pdu NAPGlyoxalate/3-oxopropanoate/4-oxobutanoate reductase / 0.669
4gkv NADAlcohol dehydrogenase, propanol-preferring 1.1.1.1 0.669
1nq5 NADGlyceraldehyde-3-phosphate dehydrogenase / 0.668
2vyn NADGlyceraldehyde-3-phosphate dehydrogenase A / 0.668
3ntq NADInositol 2-dehydrogenase/D-chiro-inositol 3-dehydrogenase 1.1.1.18 0.667
1f17 NAIHydroxyacyl-coenzyme A dehydrogenase, mitochondrial 1.1.1.35 0.666
1psd NADD-3-phosphoglycerate dehydrogenase 1.1.1.95 0.666
6adh NADAlcohol dehydrogenase E chain 1.1.1.1 0.666
1a7k NADGlyceraldehyde-3-phosphate dehydrogenase, glycosomal 1.2.1.12 0.665
1hyh NADL-2-hydroxyisocaproate dehydrogenase / 0.665
3o9z NADLipopolysaccaride biosynthesis protein wbpB / 0.665
3pqf NADL-lactate dehydrogenase 1.1.1.27 0.665
1i36 NAPConserved protein / 0.663
1sc6 NADD-3-phosphoglycerate dehydrogenase 1.1.1.95 0.663
2vyv NADGlyceraldehyde-3-phosphate dehydrogenase A / 0.663
1hld NADAlcohol dehydrogenase E chain 1.1.1.1 0.662
1u3v NADAlcohol dehydrogenase 1B 1.1.1.1 0.662
3qvx NADMyo-inositol-1-phosphate synthase (Ino1) / 0.662
1hku NADC-terminal-binding protein 1 1.1.1 0.661
3tnl NADShikimate dehydrogenase (NADP(+)) / 0.661
4dwv NAJAlcohol dehydrogenase E chain 1.1.1.1 0.661
4nfs NAJAlcohol dehydrogenase E chain 1.1.1.1 0.661
5kcz NAJAlcohol dehydrogenase E chain 1.1.1.1 0.661
5kjc NAJAlcohol dehydrogenase E chain 1.1.1.1 0.661
4y0k NAPAntE / 0.660
5kje NAJAlcohol dehydrogenase E chain 1.1.1.1 0.660
3ntr NADInositol 2-dehydrogenase/D-chiro-inositol 3-dehydrogenase 1.1.1.18 0.659
4b66 NAPL-ornithine N(5)-monooxygenase / 0.659
5kjf NAJAlcohol dehydrogenase E chain 1.1.1.1 0.659
1il0 NADHydroxyacyl-coenzyme A dehydrogenase, mitochondrial 1.1.1.35 0.658
3t4e NADQuinate/shikimate dehydrogenase / 0.658
3nt4 NAIInositol 2-dehydrogenase/D-chiro-inositol 3-dehydrogenase 1.1.1.18 0.657
4lsm NADGlyceraldehyde-3-phosphate dehydrogenase / 0.657
5bsg NAPPyrroline-5-carboxylate reductase / 0.657
1b3r NADAdenosylhomocysteinase 3.3.1.1 0.656
3jyq NADQuinate/shikimate dehydrogenase (NAD(+)) / 0.656
3oq6 NAJAlcohol dehydrogenase E chain 1.1.1.1 0.656
2ohx NADAlcohol dehydrogenase E chain 1.1.1.1 0.655
4dxh NAJAlcohol dehydrogenase E chain 1.1.1.1 0.655
4nfh NAJAlcohol dehydrogenase E chain 1.1.1.1 0.655
4xgi NADGlutamate dehydrogenase / 0.655
5a1t NAIL-lactate dehydrogenase / 0.655
5cdg NAJAlcohol dehydrogenase E chain 1.1.1.1 0.655
5kcp NAJAlcohol dehydrogenase E chain 1.1.1.1 0.655
5kj6 NAJAlcohol dehydrogenase E chain 1.1.1.1 0.655
2dvm NAD439aa long hypothetical malate oxidoreductase (NAD) [malic enzyme] / 0.654
3nt2 NADInositol 2-dehydrogenase/D-chiro-inositol 3-dehydrogenase 1.1.1.18 0.654
3zdf NADGlyceraldehyde-3-phosphate dehydrogenase / 0.654
5cdt NAJAlcohol dehydrogenase E chain 1.1.1.1 0.654
1nyt NAPShikimate dehydrogenase (NADP(+)) / 0.653
1q0q NDP1-deoxy-D-xylulose 5-phosphate reductoisomerase 1.1.1.267 0.653
4ywj NAD4-hydroxy-tetrahydrodipicolinate reductase / 0.653
1znq NADGlyceraldehyde-3-phosphate dehydrogenase 1.2.1.12 0.652
1gl3 NDPAspartate-semialdehyde dehydrogenase / 0.651
2pv7 NADT-protein 1.3.1.12 0.650
5eio NAP[LysW]-L-2-aminoadipate 6-phosphate reductase / 0.650