sc-PDB
An Annotated Database of Druggable Binding Sites from the Protein DataBank
An Annotated Database of Druggable Binding Sites from the Protein DataBank
Binding Modes are compared using Grim.
For more information, please see the following publication:
Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65
| PDB ID | HET | Uniprot Name | EC Number |
|---|---|---|---|
| 4nmj | NAP | Aldehyde dehydrogenase |
| PDB ID | HET | Uniprot Name | EC Number | Binding Mode Similarity |
Align |
|---|---|---|---|---|---|
| 4nmj | NAP | Aldehyde dehydrogenase | / | 0.835 | |
| 4nmk | NAP | Aldehyde dehydrogenase | / | 0.805 | |
| 4i1w | NAD | 2-aminomuconate 6-semialdehyde dehydrogenase | / | 0.783 | |
| 4oe2 | NAD | 2-aminomuconate 6-semialdehyde dehydrogenase | / | 0.777 | |
| 4h73 | NDP | Aldehyde dehydrogenase | / | 0.772 | |
| 2bhp | NAD | 1-pyrroline-5-carboxylate dehydrogenase | / | 0.758 | |
| 2j40 | NAD | 1-pyrroline-5-carboxylate dehydrogenase | / | 0.756 | |
| 2j5n | NAD | 1-pyrroline-5-carboxylate dehydrogenase | / | 0.756 | |
| 2ehu | NAD | 1-pyrroline-5-carboxylate dehydrogenase | / | 0.754 | |
| 2eii | NAD | 1-pyrroline-5-carboxylate dehydrogenase | / | 0.754 | |
| 2ehq | NAP | 1-pyrroline-5-carboxylate dehydrogenase | / | 0.752 | |
| 4i8q | NAD | Putative betaine aldehyde dehyrogenase | / | 0.741 | |
| 1o04 | NAD | Aldehyde dehydrogenase, mitochondrial | 1.2.1.3 | 0.737 | |
| 3iwj | NAD | Aminoaldehyde dehydrogenase | / | 0.736 | |
| 4pz2 | NAD | Aldehyde dehydrogenase 2-6 | / | 0.736 | |
| 2bja | NAD | 1-pyrroline-5-carboxylate dehydrogenase | / | 0.729 | |
| 1o9j | NAD | Aldehyde dehydrogenase, cytosolic 1 | 1.2.1.3 | 0.728 | |
| 4i9b | NAD | Putative betaine aldehyde dehyrogenase | / | 0.728 | |
| 4x2q | NAD | Retinal dehydrogenase 2 | 1.2.1.36 | 0.725 | |
| 3rhd | NAP | Lactaldehyde dehydrogenase | 1.2.1.22 | 0.724 | |
| 3n83 | ADP | Aldehyde dehydrogenase, mitochondrial | 1.2.1.3 | 0.719 | |
| 3efv | NAD | Putative succinate-semialdehyde dehydrogenase | / | 0.718 | |
| 4i8p | NAD | Aminoaldehyde dehydrogenase 1 | / | 0.715 | |
| 4f3x | NAD | Putative aldehyde dehydrogenase | / | 0.711 | |
| 4fr8 | ADP | Aldehyde dehydrogenase, mitochondrial | 1.2.1.3 | 0.711 | |
| 3zqa | NDP | NAD/NADP-dependent betaine aldehyde dehydrogenase | / | 0.710 | |
| 4i3v | NAD | Aldehyde dehydrogenase (NAD+) | / | 0.710 | |
| 4v37 | NAD | Betaine aldehyde dehydrogenase, chloroplastic | 1.2.1.8 | 0.710 | |
| 1bi9 | NAD | Retinal dehydrogenase 2 | / | 0.709 | |
| 1nzx | NAD | Aldehyde dehydrogenase, mitochondrial | 1.2.1.3 | 0.709 | |
| 3haz | NAD | Bifunctional protein PutA | / | 0.707 | |
| 2eit | NAD | 1-pyrroline-5-carboxylate dehydrogenase | / | 0.704 | |
| 4pxl | NAD | Aldehyde dehydrogenase3 | / | 0.704 | |
| 4i3w | NAD | Aldehyde dehydrogenase (NAD+) | / | 0.703 | |
| 5dib | NAD | Betaine-aldehyde dehydrogenase | / | 0.703 | |
| 2xdr | NDP | NAD/NADP-dependent betaine aldehyde dehydrogenase | / | 0.702 | |
| 4fr8 | NAD | Aldehyde dehydrogenase, mitochondrial | 1.2.1.3 | 0.700 | |
| 4ihi | NAD | Probable pyrroline-5-carboxylate dehydrogenase RocA | / | 0.697 | |
| 1a4z | NAD | Aldehyde dehydrogenase, mitochondrial | 1.2.1.3 | 0.690 | |
| 2o2q | NAP | Cytosolic 10-formyltetrahydrofolate dehydrogenase | 1.5.1.6 | 0.689 | |
| 2qe0 | NAP | NADP-dependent glyceraldehyde-3-phosphate dehydrogenase | 1.2.1.9 | 0.689 | |
| 3b4w | NAD | Aldehyde dehydrogenase family protein | / | 0.686 | |
| 2j6l | NAI | Alpha-aminoadipic semialdehyde dehydrogenase | 1.2.1.31 | 0.684 | |
| 4zuk | NAD | Alpha-aminoadipic semialdehyde dehydrogenase | 1.2.1.31 | 0.683 | |
| 2d4e | NAD | 5-carboxymethyl-2-hydroxymuconate semialdehyde dehydrogenaseiheyensis HTE831] | / | 0.682 | |
| 2y5d | NAP | 3,4-dehydroadipyl-CoA semialdehyde dehydrogenase | / | 0.682 | |
| 3rhh | NAP | NADP-dependent glyceraldehyde-3-phosphate dehydrogenase | / | 0.682 | |
| 2id2 | NAP | NADP-dependent glyceraldehyde-3-phosphate dehydrogenase | 1.2.1.9 | 0.681 | |
| 5eyu | NAD | Betaine-aldehyde dehydrogenase | / | 0.680 | |
| 2euh | NAP | NADP-dependent glyceraldehyde-3-phosphate dehydrogenase | 1.2.1.9 | 0.679 | |
| 5ez4 | NAD | Betaine-aldehyde dehydrogenase | / | 0.677 | |
| 2imp | NAI | Lactaldehyde dehydrogenase | 1.2.1.22 | 0.675 | |
| 4jdc | NAD | Probable pyrroline-5-carboxylate dehydrogenase RocA | / | 0.674 | |
| 1uxr | NAP | NAD(P)-dependent glyceraldehyde-3-phosphate dehydrogenase | / | 0.673 | |
| 4oe4 | NAD | Delta-1-pyrroline-5-carboxylate dehydrogenase, mitochondrial | 1.2.1.88 | 0.673 | |
| 2wme | NAP | NAD/NADP-dependent betaine aldehyde dehydrogenase | / | 0.672 | |
| 2onm | ADP | Aldehyde dehydrogenase, mitochondrial | 1.2.1.3 | 0.666 | |
| 2onm | NAD | Aldehyde dehydrogenase, mitochondrial | 1.2.1.3 | 0.662 | |
| 2w8r | ADP | Succinate-semialdehyde dehydrogenase, mitochondrial | 1.2.1.24 | 0.659 | |
| 4c3s | NAD | Aldehyde Dehydrogenase | / | 0.654 | |
| 3kt3 | TYM | Tryptophan--tRNA ligase, cytoplasmic | 6.1.1.2 | 0.651 | |
| 4go2 | TAP | Cytosolic 10-formyltetrahydrofolate dehydrogenase | 1.5.1.6 | 0.651 | |
| 2jg7 | NAD | Antiquitin | / | 0.650 |