2.450 Å
X-ray
2011-06-08
Name: | NAD/NADP-dependent betaine aldehyde dehydrogenase |
---|---|
ID: | BETB_PSEAE |
AC: | Q9HTJ1 |
Organism: | Pseudomonas aeruginosa |
Reign: | Bacteria |
TaxID: | 208964 |
EC Number: | / |
Chain Name: | Percentage of Residues within binding site |
---|---|
B | 100 % |
B-Factor: | 43.976 |
---|---|
Number of residues: | 45 |
Including | |
Standard Amino Acids: | 43 |
Non Standard Amino Acids: | 0 |
Water Molecules: | 2 |
Cofactors: | |
Metals: |
Ligandability | Volume (Å3) |
---|---|
0.404 | 391.500 |
% Hydrophobic | % Polar |
---|---|
48.28 | 51.72 |
According to VolSite |
HET Code: | NDP |
---|---|
Formula: | C21H26N7O17P3 |
Molecular weight: | 741.389 g/mol |
DrugBank ID: | DB02338 |
Buried Surface Area: | 58.72 % |
Polar Surface area: | 404.9 Å2 |
Number of | |
---|---|
H-Bond Acceptors: | 22 |
H-Bond Donors: | 5 |
Rings: | 5 |
Aromatic rings: | 2 |
Anionic atoms: | 4 |
Cationic atoms: | 0 |
Rule of Five Violation: | 2 |
Rotatable Bonds: | 13 |
X | Y | Z |
---|---|---|
51.7512 | -91.8208 | -21.1957 |
Represent the protein/ligand binding mode, centered on the ligand
Dashed lines represents hydrogen bonds and metal interactions
Green residue labels for amino acids with hydrophobic contacts (green lines) to the ligand
Ligand | Protein | Interaction | |||
---|---|---|---|---|---|
Atom | Atom | Residue | Distance (Å) | Angle (°) | Type |
C1B | CG2 | ILE- 149 | 3.89 | 0 | Hydrophobic |
C4B | CG2 | ILE- 149 | 4.05 | 0 | Hydrophobic |
O3B | O | GLY- 150 | 2.69 | 177.4 | H-Bond (Ligand Donor) |
C4N | CB | ALA- 151 | 3.4 | 0 | Hydrophobic |
O2N | NE1 | TRP- 152 | 3.19 | 144.08 | H-Bond (Protein Donor) |
O2B | NZ | LYS- 176 | 3.08 | 167.18 | H-Bond (Protein Donor) |
O1X | NZ | LYS- 176 | 3.06 | 127.29 | H-Bond (Protein Donor) |
O1X | NZ | LYS- 176 | 3.06 | 0 | Ionic (Protein Cationic) |
C3B | CB | SER- 178 | 4.4 | 0 | Hydrophobic |
O1X | N | GLU- 179 | 2.56 | 167.38 | H-Bond (Protein Donor) |
O2X | N | GLY- 209 | 2.76 | 156.76 | H-Bond (Protein Donor) |
C5B | CZ | PHE- 227 | 4.03 | 0 | Hydrophobic |
C4B | CE1 | PHE- 227 | 3.79 | 0 | Hydrophobic |
C1B | CE1 | PHE- 227 | 4.11 | 0 | Hydrophobic |
O1A | N | GLY- 230 | 2.72 | 175.29 | H-Bond (Protein Donor) |
O2A | OG1 | THR- 233 | 3.02 | 171.69 | H-Bond (Protein Donor) |
C2D | CB | PHE- 389 | 3.98 | 0 | Hydrophobic |