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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3zqa NDP NAD/NADP-dependent betaine aldehyde dehydrogenase

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
3zqa NDPNAD/NADP-dependent betaine aldehyde dehydrogenase / 1.018
2wme NAPNAD/NADP-dependent betaine aldehyde dehydrogenase / 0.904
2xdr NDPNAD/NADP-dependent betaine aldehyde dehydrogenase / 0.816
1uxu NAPNAD(P)-dependent glyceraldehyde-3-phosphate dehydrogenase / 0.768
2o2r NDPCytosolic 10-formyltetrahydrofolate dehydrogenase 1.5.1.6 0.754
3rhr NDPCytosolic 10-formyltetrahydrofolate dehydrogenase 1.5.1.6 0.742
2onm NADAldehyde dehydrogenase, mitochondrial 1.2.1.3 0.738
1uxr NAPNAD(P)-dependent glyceraldehyde-3-phosphate dehydrogenase / 0.731
3rhj NAPCytosolic 10-formyltetrahydrofolate dehydrogenase 1.5.1.6 0.731
1bxs NADRetinal dehydrogenase 1 1.2.1.36 0.728
3rhl NAPCytosolic 10-formyltetrahydrofolate dehydrogenase 1.5.1.6 0.728
2ehq NAP1-pyrroline-5-carboxylate dehydrogenase / 0.727
4oe2 NAD2-aminomuconate 6-semialdehyde dehydrogenase / 0.726
1uxp NAPNAD(P)-dependent glyceraldehyde-3-phosphate dehydrogenase / 0.723
4gnz NAPCytosolic 10-formyltetrahydrofolate dehydrogenase 1.5.1.6 0.723
2o2q NAPCytosolic 10-formyltetrahydrofolate dehydrogenase 1.5.1.6 0.722
4fr8 NADAldehyde dehydrogenase, mitochondrial 1.2.1.3 0.722
3rho NAPCytosolic 10-formyltetrahydrofolate dehydrogenase 1.5.1.6 0.719
3n83 ADPAldehyde dehydrogenase, mitochondrial 1.2.1.3 0.718
1uxn NAPNAD(P)-dependent glyceraldehyde-3-phosphate dehydrogenase / 0.716
4zuk NADAlpha-aminoadipic semialdehyde dehydrogenase 1.2.1.31 0.716
4f3x NADPutative aldehyde dehydrogenase / 0.715
1o04 NADAldehyde dehydrogenase, mitochondrial 1.2.1.3 0.714
3rhq NAPCytosolic 10-formyltetrahydrofolate dehydrogenase 1.5.1.6 0.713
3n82 NADAldehyde dehydrogenase, mitochondrial 1.2.1.3 0.710
4nmj NAPAldehyde dehydrogenase / 0.710
4nmk NAPAldehyde dehydrogenase / 0.709
2j6l NAIAlpha-aminoadipic semialdehyde dehydrogenase 1.2.1.31 0.707
4pz2 NADAldehyde dehydrogenase 2-6 / 0.706
4fr8 ADPAldehyde dehydrogenase, mitochondrial 1.2.1.3 0.705
4i1w NAD2-aminomuconate 6-semialdehyde dehydrogenase / 0.701
4h73 NDPAldehyde dehydrogenase / 0.700
4x2q NADRetinal dehydrogenase 2 1.2.1.36 0.699
4pxl NADAldehyde dehydrogenase3 / 0.698
2onp NADAldehyde dehydrogenase, mitochondrial 1.2.1.3 0.696
4fqf NADAldehyde dehydrogenase, mitochondrial 1.2.1.3 0.696
1a4z NADAldehyde dehydrogenase, mitochondrial 1.2.1.3 0.692
4itb NDPSuccinate-semialdehyde dehydrogenase / 0.691
1cw3 NADAldehyde dehydrogenase, mitochondrial 1.2.1.3 0.688
1o01 NADAldehyde dehydrogenase, mitochondrial 1.2.1.3 0.688
3iwj NADAminoaldehyde dehydrogenase / 0.688
4i8p NADAminoaldehyde dehydrogenase 1 / 0.688
1t90 NADMalonate-semialdehyde dehydrogenase 1.2.1.27 0.684
3b4w NADAldehyde dehydrogenase family protein / 0.684
5eyu NADBetaine-aldehyde dehydrogenase / 0.680
1uxv NAPNAD(P)-dependent glyceraldehyde-3-phosphate dehydrogenase / 0.679
2y5d NAP3,4-dehydroadipyl-CoA semialdehyde dehydrogenase / 0.677
5dib NADBetaine-aldehyde dehydrogenase / 0.676
1o02 NADAldehyde dehydrogenase, mitochondrial 1.2.1.3 0.675
4i3v NADAldehyde dehydrogenase (NAD+) / 0.675
3rhd NAPLactaldehyde dehydrogenase 1.2.1.22 0.673
4x4l NAIRetinal dehydrogenase 1 1.2.1.36 0.673
1o9j NADAldehyde dehydrogenase, cytosolic 1 1.2.1.3 0.671
1wnb NAIGamma-aminobutyraldehyde dehydrogenase 1.2.1.19 0.670
3efv NADPutative succinate-semialdehyde dehydrogenase / 0.670
2jg7 NADAntiquitin / 0.669
4pt0 NADAldehyde dehydrogenase / 0.667
4wb9 NAIRetinal dehydrogenase 1 1.2.1.36 0.666
2id2 NAPNADP-dependent glyceraldehyde-3-phosphate dehydrogenase 1.2.1.9 0.665
2bfo NDPPteridine reductase 1 1.5.1.33 0.663
1nzx NADAldehyde dehydrogenase, mitochondrial 1.2.1.3 0.662
1o00 NADAldehyde dehydrogenase, mitochondrial 1.2.1.3 0.662
4a0m NADBetaine aldehyde dehydrogenase, chloroplastic 1.2.1.8 0.658