2.000 Å
X-ray
2013-11-15
Name: | Aldehyde dehydrogenase |
---|---|
ID: | G7VCG0_9CREN |
AC: | G7VCG0 |
Organism: | Pyrobaculum ferrireducens |
Reign: | Archaea |
TaxID: | 1104324 |
EC Number: | / |
Chain Name: | Percentage of Residues within binding site |
---|---|
D | 100 % |
B-Factor: | 21.031 |
---|---|
Number of residues: | 35 |
Including | |
Standard Amino Acids: | 33 |
Non Standard Amino Acids: | 0 |
Water Molecules: | 2 |
Cofactors: | |
Metals: |
Ligandability | Volume (Å3) |
---|---|
0.874 | 978.750 |
% Hydrophobic | % Polar |
---|---|
43.10 | 56.90 |
According to VolSite |
HET Code: | NAP |
---|---|
Formula: | C21H25N7O17P3 |
Molecular weight: | 740.381 g/mol |
DrugBank ID: | DB03461 |
Buried Surface Area: | 71.66 % |
Polar Surface area: | 405.54 Å2 |
Number of | |
---|---|
H-Bond Acceptors: | 21 |
H-Bond Donors: | 5 |
Rings: | 5 |
Aromatic rings: | 3 |
Anionic atoms: | 4 |
Cationic atoms: | 1 |
Rule of Five Violation: | 2 |
Rotatable Bonds: | 13 |
X | Y | Z |
---|---|---|
41.9948 | 54.8221 | 74.2173 |
Represent the protein/ligand binding mode, centered on the ligand
Dashed lines represents hydrogen bonds and metal interactions
Green residue labels for amino acids with hydrophobic contacts (green lines) to the ligand
Ligand | Protein | Interaction | |||
---|---|---|---|---|---|
Atom | Atom | Residue | Distance (Å) | Angle (°) | Type |
C1B | CG2 | ILE- 151 | 3.66 | 0 | Hydrophobic |
C4B | CG2 | ILE- 151 | 3.54 | 0 | Hydrophobic |
O3B | O | THR- 152 | 2.8 | 161.38 | H-Bond (Ligand Donor) |
O1N | NE1 | TRP- 154 | 3.03 | 139.24 | H-Bond (Protein Donor) |
O2B | NZ | LYS- 178 | 2.75 | 143.64 | H-Bond (Protein Donor) |
C3B | CB | ALA- 180 | 4.42 | 0 | Hydrophobic |
C1B | CE1 | PHE- 229 | 4.29 | 0 | Hydrophobic |
C4B | CE1 | PHE- 229 | 3.62 | 0 | Hydrophobic |
O1A | N | GLU- 232 | 2.94 | 164.7 | H-Bond (Protein Donor) |
O3 | N | GLU- 232 | 3.29 | 130.47 | H-Bond (Protein Donor) |
O1A | OG1 | THR- 235 | 2.64 | 156.41 | H-Bond (Protein Donor) |