1.900 Å
X-ray
2012-12-05
Name: | Putative betaine aldehyde dehyrogenase |
---|---|
ID: | Q56R04_SOLLC |
AC: | Q56R04 |
Organism: | Solanum lycopersicum |
Reign: | Eukaryota |
TaxID: | 4081 |
EC Number: | / |
Chain Name: | Percentage of Residues within binding site |
---|---|
B | 100 % |
B-Factor: | 23.230 |
---|---|
Number of residues: | 34 |
Including | |
Standard Amino Acids: | 33 |
Non Standard Amino Acids: | 0 |
Water Molecules: | 1 |
Cofactors: | |
Metals: |
Ligandability | Volume (Å3) |
---|---|
0.548 | 624.375 |
% Hydrophobic | % Polar |
---|---|
39.46 | 60.54 |
According to VolSite |
HET Code: | NAD |
---|---|
Formula: | C21H26N7O14P2 |
Molecular weight: | 662.417 g/mol |
DrugBank ID: | - |
Buried Surface Area: | 60.33 % |
Polar Surface area: | 343.54 Å2 |
Number of | |
---|---|
H-Bond Acceptors: | 18 |
H-Bond Donors: | 6 |
Rings: | 5 |
Aromatic rings: | 3 |
Anionic atoms: | 2 |
Cationic atoms: | 1 |
Rule of Five Violation: | 3 |
Rotatable Bonds: | 11 |
X | Y | Z |
---|---|---|
-7.266 | 13.2123 | -26.8661 |
Represent the protein/ligand binding mode, centered on the ligand
Dashed lines represents hydrogen bonds and metal interactions
Green residue labels for amino acids with hydrophobic contacts (green lines) to the ligand
Ligand | Protein | Interaction | |||
---|---|---|---|---|---|
Atom | Atom | Residue | Distance (Å) | Angle (°) | Type |
C1B | CG2 | ILE- 158 | 3.58 | 0 | Hydrophobic |
C4B | CG2 | ILE- 158 | 3.63 | 0 | Hydrophobic |
O3B | O | THR- 159 | 2.83 | 163.03 | H-Bond (Ligand Donor) |
O1N | NE1 | TRP- 161 | 2.85 | 144.81 | H-Bond (Protein Donor) |
O5D | NE1 | TRP- 161 | 3.33 | 132.97 | H-Bond (Protein Donor) |
O2B | NZ | LYS- 185 | 2.76 | 171.97 | H-Bond (Protein Donor) |
C3B | CB | SER- 187 | 4.07 | 0 | Hydrophobic |
O2B | OE2 | GLU- 188 | 2.59 | 142.97 | H-Bond (Ligand Donor) |
C5B | CE1 | PHE- 236 | 3.77 | 0 | Hydrophobic |
O2A | OG | SER- 239 | 2.84 | 154.05 | H-Bond (Protein Donor) |
O2A | N | SER- 239 | 2.51 | 167.99 | H-Bond (Protein Donor) |
O1A | OG1 | THR- 242 | 2.92 | 164 | H-Bond (Protein Donor) |
O2A | OG1 | THR- 242 | 3.44 | 120.39 | H-Bond (Protein Donor) |
C1B | CG2 | THR- 242 | 4.27 | 0 | Hydrophobic |