1.900 Å
X-ray
2012-12-05
| Name: | Putative betaine aldehyde dehyrogenase |
|---|---|
| ID: | Q56R04_SOLLC |
| AC: | Q56R04 |
| Organism: | Solanum lycopersicum |
| Reign: | Eukaryota |
| TaxID: | 4081 |
| EC Number: | / |
| Chain Name: | Percentage of Residues within binding site |
|---|---|
| B | 100 % |
| B-Factor: | 23.230 |
|---|---|
| Number of residues: | 34 |
| Including | |
| Standard Amino Acids: | 33 |
| Non Standard Amino Acids: | 0 |
| Water Molecules: | 1 |
| Cofactors: | |
| Metals: | |
| Ligandability | Volume (Å3) |
|---|---|
| 0.548 | 624.375 |
| % Hydrophobic | % Polar |
|---|---|
| 39.46 | 60.54 |
| According to VolSite | |

| HET Code: | NAD |
|---|---|
| Formula: | C21H26N7O14P2 |
| Molecular weight: | 662.417 g/mol |
| DrugBank ID: | - |
| Buried Surface Area: | 60.33 % |
| Polar Surface area: | 343.54 Å2 |
| Number of | |
|---|---|
| H-Bond Acceptors: | 18 |
| H-Bond Donors: | 6 |
| Rings: | 5 |
| Aromatic rings: | 3 |
| Anionic atoms: | 2 |
| Cationic atoms: | 1 |
| Rule of Five Violation: | 3 |
| Rotatable Bonds: | 11 |
| X | Y | Z |
|---|---|---|
| -7.266 | 13.2123 | -26.8661 |
Image generated by PoseView
Represent the protein/ligand binding mode, centered on the ligand
Dashed lines represents hydrogen bonds and metal interactions
Green residue labels for amino acids with hydrophobic contacts (green lines) to the ligand
| Ligand | Protein | Interaction | |||
|---|---|---|---|---|---|
| Atom | Atom | Residue | Distance (Å) | Angle (°) | Type |
| C1B | CG2 | ILE- 158 | 3.58 | 0 | Hydrophobic |
| C4B | CG2 | ILE- 158 | 3.63 | 0 | Hydrophobic |
| O3B | O | THR- 159 | 2.83 | 163.03 | H-Bond (Ligand Donor) |
| O1N | NE1 | TRP- 161 | 2.85 | 144.81 | H-Bond (Protein Donor) |
| O5D | NE1 | TRP- 161 | 3.33 | 132.97 | H-Bond (Protein Donor) |
| O2B | NZ | LYS- 185 | 2.76 | 171.97 | H-Bond (Protein Donor) |
| C3B | CB | SER- 187 | 4.07 | 0 | Hydrophobic |
| O2B | OE2 | GLU- 188 | 2.59 | 142.97 | H-Bond (Ligand Donor) |
| C5B | CE1 | PHE- 236 | 3.77 | 0 | Hydrophobic |
| O2A | OG | SER- 239 | 2.84 | 154.05 | H-Bond (Protein Donor) |
| O2A | N | SER- 239 | 2.51 | 167.99 | H-Bond (Protein Donor) |
| O1A | OG1 | THR- 242 | 2.92 | 164 | H-Bond (Protein Donor) |
| O2A | OG1 | THR- 242 | 3.44 | 120.39 | H-Bond (Protein Donor) |
| C1B | CG2 | THR- 242 | 4.27 | 0 | Hydrophobic |