2.400 Å
X-ray
2009-01-19
| Name: | Succinate-semialdehyde dehydrogenase, mitochondrial |
|---|---|
| ID: | SSDH_HUMAN |
| AC: | P51649 |
| Organism: | Homo sapiens |
| Reign: | Eukaryota |
| TaxID: | 9606 |
| EC Number: | 1.2.1.24 |
| Chain Name: | Percentage of Residues within binding site |
|---|---|
| A | 100 % |
| B-Factor: | 36.181 |
|---|---|
| Number of residues: | 35 |
| Including | |
| Standard Amino Acids: | 33 |
| Non Standard Amino Acids: | 0 |
| Water Molecules: | 2 |
| Cofactors: | |
| Metals: | |
| Ligandability | Volume (Å3) |
|---|---|
| 0.430 | 361.125 |
| % Hydrophobic | % Polar |
|---|---|
| 49.53 | 50.47 |
| According to VolSite | |

| HET Code: | ADP |
|---|---|
| Formula: | C10H12N5O10P2 |
| Molecular weight: | 424.177 g/mol |
| DrugBank ID: | - |
| Buried Surface Area: | 53.46 % |
| Polar Surface area: | 260.7 Å2 |
| Number of | |
|---|---|
| H-Bond Acceptors: | 14 |
| H-Bond Donors: | 3 |
| Rings: | 3 |
| Aromatic rings: | 2 |
| Anionic atoms: | 3 |
| Cationic atoms: | 0 |
| Rule of Five Violation: | 1 |
| Rotatable Bonds: | 6 |
| X | Y | Z |
|---|---|---|
| 32.3826 | -50.2175 | -61.4674 |
Image generated by PoseView
Represent the protein/ligand binding mode, centered on the ligand
Dashed lines represents hydrogen bonds and metal interactions
Green residue labels for amino acids with hydrophobic contacts (green lines) to the ligand
| Ligand | Protein | Interaction | |||
|---|---|---|---|---|---|
| Atom | Atom | Residue | Distance (Å) | Angle (°) | Type |
| C4' | CG2 | ILE- 201 | 4.09 | 0 | Hydrophobic |
| C1' | CG2 | ILE- 201 | 3.98 | 0 | Hydrophobic |
| O3' | O | THR- 202 | 2.86 | 137.04 | H-Bond (Ligand Donor) |
| C5' | CB | PRO- 203 | 4.45 | 0 | Hydrophobic |
| O3' | NZ | LYS- 228 | 2.95 | 150.08 | H-Bond (Protein Donor) |
| C3' | CB | ALA- 230 | 4.14 | 0 | Hydrophobic |
| O2' | OE1 | GLU- 231 | 3.17 | 159.2 | H-Bond (Ligand Donor) |
| C4' | CE1 | PHE- 282 | 4.22 | 0 | Hydrophobic |
| O2A | N | SER- 285 | 3.47 | 148.59 | H-Bond (Protein Donor) |
| O2A | OG | SER- 285 | 2.66 | 163.17 | H-Bond (Protein Donor) |
| O2A | OG1 | THR- 288 | 2.7 | 153.55 | H-Bond (Protein Donor) |