2.240 Å
X-ray
2012-11-26
| Name: | Aldehyde dehydrogenase (NAD+) |
|---|---|
| ID: | Q92UV7_RHIME |
| AC: | Q92UV7 |
| Organism: | Rhizobium meliloti |
| Reign: | Bacteria |
| TaxID: | 266834 |
| EC Number: | / |
| Chain Name: | Percentage of Residues within binding site |
|---|---|
| C | 97 % |
| G | 3 % |
| B-Factor: | 22.080 |
|---|---|
| Number of residues: | 37 |
| Including | |
| Standard Amino Acids: | 34 |
| Non Standard Amino Acids: | 0 |
| Water Molecules: | 3 |
| Cofactors: | |
| Metals: | |
| Ligandability | Volume (Å3) |
|---|---|
| 1.530 | 1127.250 |
| % Hydrophobic | % Polar |
|---|---|
| 49.40 | 50.60 |
| According to VolSite | |

| HET Code: | NAD |
|---|---|
| Formula: | C21H26N7O14P2 |
| Molecular weight: | 662.417 g/mol |
| DrugBank ID: | - |
| Buried Surface Area: | 52.8 % |
| Polar Surface area: | 343.54 Å2 |
| Number of | |
|---|---|
| H-Bond Acceptors: | 18 |
| H-Bond Donors: | 6 |
| Rings: | 5 |
| Aromatic rings: | 3 |
| Anionic atoms: | 2 |
| Cationic atoms: | 1 |
| Rule of Five Violation: | 3 |
| Rotatable Bonds: | 11 |
| X | Y | Z |
|---|---|---|
| 69.9409 | -72.1349 | 16.4447 |
Image generated by PoseView
Represent the protein/ligand binding mode, centered on the ligand
Dashed lines represents hydrogen bonds and metal interactions
Green residue labels for amino acids with hydrophobic contacts (green lines) to the ligand
| Ligand | Protein | Interaction | |||
|---|---|---|---|---|---|
| Atom | Atom | Residue | Distance (Å) | Angle (°) | Type |
| C1B | CG2 | ILE- 154 | 3.85 | 0 | Hydrophobic |
| C4B | CG2 | ILE- 154 | 3.69 | 0 | Hydrophobic |
| O3B | O | THR- 155 | 2.74 | 152.88 | H-Bond (Ligand Donor) |
| C5B | CB | PRO- 156 | 4.16 | 0 | Hydrophobic |
| O2N | N | PHE- 157 | 3.22 | 147.01 | H-Bond (Protein Donor) |
| C3D | CE2 | PHE- 157 | 3.79 | 0 | Hydrophobic |
| O3B | NZ | LYS- 181 | 2.9 | 159.6 | H-Bond (Protein Donor) |
| O2B | NZ | LYS- 181 | 3.27 | 122.28 | H-Bond (Protein Donor) |
| C3B | CB | THR- 183 | 3.61 | 0 | Hydrophobic |
| O2B | OE1 | GLU- 184 | 3.06 | 127.4 | H-Bond (Ligand Donor) |
| C3D | CD1 | LEU- 185 | 3.84 | 0 | Hydrophobic |
| C4B | CE1 | PHE- 232 | 3.83 | 0 | Hydrophobic |
| O1A | N | SER- 235 | 2.98 | 167.23 | H-Bond (Protein Donor) |
| O1A | OG | SER- 235 | 2.95 | 153.58 | H-Bond (Protein Donor) |
| O3 | N | SER- 235 | 3.43 | 121.48 | H-Bond (Protein Donor) |
| C1D | CG2 | ILE- 334 | 4.43 | 0 | Hydrophobic |
| O2D | NE2 | HIS- 335 | 3.28 | 168.54 | H-Bond (Protein Donor) |