2.240 Å
X-ray
2012-11-26
Name: | Aldehyde dehydrogenase (NAD+) |
---|---|
ID: | Q92UV7_RHIME |
AC: | Q92UV7 |
Organism: | Rhizobium meliloti |
Reign: | Bacteria |
TaxID: | 266834 |
EC Number: | / |
Chain Name: | Percentage of Residues within binding site |
---|---|
C | 97 % |
G | 3 % |
B-Factor: | 22.080 |
---|---|
Number of residues: | 37 |
Including | |
Standard Amino Acids: | 34 |
Non Standard Amino Acids: | 0 |
Water Molecules: | 3 |
Cofactors: | |
Metals: |
Ligandability | Volume (Å3) |
---|---|
1.530 | 1127.250 |
% Hydrophobic | % Polar |
---|---|
49.40 | 50.60 |
According to VolSite |
HET Code: | NAD |
---|---|
Formula: | C21H26N7O14P2 |
Molecular weight: | 662.417 g/mol |
DrugBank ID: | - |
Buried Surface Area: | 52.8 % |
Polar Surface area: | 343.54 Å2 |
Number of | |
---|---|
H-Bond Acceptors: | 18 |
H-Bond Donors: | 6 |
Rings: | 5 |
Aromatic rings: | 3 |
Anionic atoms: | 2 |
Cationic atoms: | 1 |
Rule of Five Violation: | 3 |
Rotatable Bonds: | 11 |
X | Y | Z |
---|---|---|
69.9409 | -72.1349 | 16.4447 |
Represent the protein/ligand binding mode, centered on the ligand
Dashed lines represents hydrogen bonds and metal interactions
Green residue labels for amino acids with hydrophobic contacts (green lines) to the ligand
Ligand | Protein | Interaction | |||
---|---|---|---|---|---|
Atom | Atom | Residue | Distance (Å) | Angle (°) | Type |
C1B | CG2 | ILE- 154 | 3.85 | 0 | Hydrophobic |
C4B | CG2 | ILE- 154 | 3.69 | 0 | Hydrophobic |
O3B | O | THR- 155 | 2.74 | 152.88 | H-Bond (Ligand Donor) |
C5B | CB | PRO- 156 | 4.16 | 0 | Hydrophobic |
O2N | N | PHE- 157 | 3.22 | 147.01 | H-Bond (Protein Donor) |
C3D | CE2 | PHE- 157 | 3.79 | 0 | Hydrophobic |
O3B | NZ | LYS- 181 | 2.9 | 159.6 | H-Bond (Protein Donor) |
O2B | NZ | LYS- 181 | 3.27 | 122.28 | H-Bond (Protein Donor) |
C3B | CB | THR- 183 | 3.61 | 0 | Hydrophobic |
O2B | OE1 | GLU- 184 | 3.06 | 127.4 | H-Bond (Ligand Donor) |
C3D | CD1 | LEU- 185 | 3.84 | 0 | Hydrophobic |
C4B | CE1 | PHE- 232 | 3.83 | 0 | Hydrophobic |
O1A | N | SER- 235 | 2.98 | 167.23 | H-Bond (Protein Donor) |
O1A | OG | SER- 235 | 2.95 | 153.58 | H-Bond (Protein Donor) |
O3 | N | SER- 235 | 3.43 | 121.48 | H-Bond (Protein Donor) |
C1D | CG2 | ILE- 334 | 4.43 | 0 | Hydrophobic |
O2D | NE2 | HIS- 335 | 3.28 | 168.54 | H-Bond (Protein Donor) |