1.600 Å
X-ray
2013-02-24
Name: | Probable pyrroline-5-carboxylate dehydrogenase RocA |
---|---|
ID: | O50443_MYCTU |
AC: | O50443 |
Organism: | Mycobacterium tuberculosis |
Reign: | Bacteria |
TaxID: | 83332 |
EC Number: | / |
Chain Name: | Percentage of Residues within binding site |
---|---|
A | 100 % |
B-Factor: | 27.933 |
---|---|
Number of residues: | 35 |
Including | |
Standard Amino Acids: | 33 |
Non Standard Amino Acids: | 1 |
Water Molecules: | 1 |
Cofactors: | |
Metals: |
Ligandability | Volume (Å3) |
---|---|
0.765 | 880.875 |
% Hydrophobic | % Polar |
---|---|
50.96 | 49.04 |
According to VolSite |
HET Code: | NAD |
---|---|
Formula: | C21H26N7O14P2 |
Molecular weight: | 662.417 g/mol |
DrugBank ID: | - |
Buried Surface Area: | 61.69 % |
Polar Surface area: | 343.54 Å2 |
Number of | |
---|---|
H-Bond Acceptors: | 18 |
H-Bond Donors: | 6 |
Rings: | 5 |
Aromatic rings: | 3 |
Anionic atoms: | 2 |
Cationic atoms: | 1 |
Rule of Five Violation: | 3 |
Rotatable Bonds: | 11 |
X | Y | Z |
---|---|---|
47.499 | 23.7127 | 28.8784 |
Represent the protein/ligand binding mode, centered on the ligand
Dashed lines represents hydrogen bonds and metal interactions
Green residue labels for amino acids with hydrophobic contacts (green lines) to the ligand
Ligand | Protein | Interaction | |||
---|---|---|---|---|---|
Atom | Atom | Residue | Distance (Å) | Angle (°) | Type |
C1B | CG2 | ILE- 186 | 3.68 | 0 | Hydrophobic |
C4B | CG2 | ILE- 186 | 3.59 | 0 | Hydrophobic |
O3B | O | THR- 187 | 2.7 | 163.76 | H-Bond (Ligand Donor) |
C5B | CB | PRO- 188 | 4.37 | 0 | Hydrophobic |
O2N | N | PHE- 189 | 3.06 | 152.71 | H-Bond (Protein Donor) |
O2B | NZ | LYS- 212 | 2.82 | 156.43 | H-Bond (Protein Donor) |
C3B | CB | SER- 214 | 4.15 | 0 | Hydrophobic |
C5B | CE1 | PHE- 263 | 4.32 | 0 | Hydrophobic |
O1A | OG | SER- 266 | 3.01 | 146.79 | H-Bond (Protein Donor) |
O1A | N | SER- 266 | 2.81 | 175.12 | H-Bond (Protein Donor) |
O1A | OG1 | THR- 269 | 3.2 | 149.03 | H-Bond (Protein Donor) |
O1N | OH | CME- 327 | 3.16 | 166.48 | H-Bond (Protein Donor) |