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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3cos NAD Alcohol dehydrogenase 4 1.1.1.1

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
3cos NADAlcohol dehydrogenase 4 1.1.1.1 1.243
2ohx NADAlcohol dehydrogenase E chain 1.1.1.1 1.058
1u3v NADAlcohol dehydrogenase 1B 1.1.1.1 0.985
4nfh NAJAlcohol dehydrogenase E chain 1.1.1.1 0.976
3oq6 NAJAlcohol dehydrogenase E chain 1.1.1.1 0.972
5kj6 NAJAlcohol dehydrogenase E chain 1.1.1.1 0.971
5kjc NAJAlcohol dehydrogenase E chain 1.1.1.1 0.967
5kje NAJAlcohol dehydrogenase E chain 1.1.1.1 0.958
4dwv NAJAlcohol dehydrogenase E chain 1.1.1.1 0.957
4gkv NADAlcohol dehydrogenase, propanol-preferring 1.1.1.1 0.956
5cdt NAJAlcohol dehydrogenase E chain 1.1.1.1 0.956
1lde NADAlcohol dehydrogenase E chain 1.1.1.1 0.954
5cds NAJAlcohol dehydrogenase E chain 1.1.1.1 0.940
5kj1 NAJAlcohol dehydrogenase E chain 1.1.1.1 0.940
1mgo NADAlcohol dehydrogenase E chain 1.1.1.1 0.938
5kcp NAJAlcohol dehydrogenase E chain 1.1.1.1 0.936
1axe NADAlcohol dehydrogenase E chain 1.1.1.1 0.926
4dxh NAJAlcohol dehydrogenase E chain 1.1.1.1 0.926
5cdg NAJAlcohol dehydrogenase E chain 1.1.1.1 0.925
5kjf NAJAlcohol dehydrogenase E chain 1.1.1.1 0.922
1h2b NAJNAD-dependent alcohol dehydrogenase / 0.919
5kcz NAJAlcohol dehydrogenase E chain 1.1.1.1 0.917
1ht0 NADAlcohol dehydrogenase 1C 1.1.1.1 0.911
3jv7 NADSecondary alcohol dehydrogenase / 0.910
1het NADAlcohol dehydrogenase E chain 1.1.1.1 0.889
2oxi NADAlcohol dehydrogenase E chain 1.1.1.1 0.883
1hld NADAlcohol dehydrogenase E chain 1.1.1.1 0.876
6adh NADAlcohol dehydrogenase E chain 1.1.1.1 0.875
1yqd NAPSinapyl alcohol dehydrogenase / 0.870
4xd2 NAIAlcohol dehydrogenase E chain 1.1.1.1 0.870
1r37 NADNAD-dependent alcohol dehydrogenase 1.1.1.1 0.866
4rqu NADAlcohol dehydrogenase class-P / 0.864
4w6z 8IDAlcohol dehydrogenase 1 1.1.1.1 0.864
2eer NADNAD-dependent alcohol dehydrogenase 1.1.1.1 0.862
3two NDPMannitol dehydrogenase / 0.859
3wle NAD(R)-specific carbonyl reductase / 0.855
1a71 NADAlcohol dehydrogenase E chain 1.1.1.1 0.853
1hf3 NADAlcohol dehydrogenase E chain 1.1.1.1 0.853
4c4o NADSADH / 0.853
1heu NADAlcohol dehydrogenase E chain 1.1.1.1 0.852
1adc PADAlcohol dehydrogenase E chain 1.1.1.1 0.844
1adb CNDAlcohol dehydrogenase E chain 1.1.1.1 0.841
2xaa NADSecondary alcohol dehydrogenase / 0.840
4ng5 NAJAlcohol dehydrogenase E chain 1.1.1.1 0.837
5env NADAlcohol dehydrogenase 1 1.1.1.1 0.826
1axg NADAlcohol dehydrogenase E chain 1.1.1.1 0.822
4oaq NDPR-specific carbonyl reductase / 0.813
4dl9 NADS-(hydroxymethyl)glutathione dehydrogenase / 0.811
1kol NADGlutathione-independent formaldehyde dehydrogenase / 0.810
1mp0 NADAlcohol dehydrogenase class-3 1.1.1.1 0.808
1u7h NADPutative ornithine cyclodeaminase / 0.805
1x7d NADPutative ornithine cyclodeaminase / 0.804
4dlb NADS-(hydroxymethyl)glutathione dehydrogenase / 0.800
1hdz NADAlcohol dehydrogenase 1B 1.1.1.1 0.792
2fzw NADAlcohol dehydrogenase class-3 1.1.1.1 0.791
2jhf NADAlcohol dehydrogenase E chain 1.1.1.1 0.786
4nfs NAJAlcohol dehydrogenase E chain 1.1.1.1 0.786
1yqx NAPSinapyl alcohol dehydrogenase / 0.784
1hyh NADL-2-hydroxyisocaproate dehydrogenase / 0.781
1o6z NADMalate dehydrogenase / 0.781
3h3j NADL-lactate dehydrogenase 1 1.1.1.27 0.781
1hsz NADAlcohol dehydrogenase 1B 1.1.1.1 0.780
4jji NADAlcohol dehydrogenase class-3 / 0.775
1pl6 NADSorbitol dehydrogenase 1.1.1.14 0.772
1t2d NADL-lactate dehydrogenase 1.1.1.27 0.772
4j43 NADUncharacterized protein / 0.772
1e3l NADAlcohol dehydrogenase 4 1.1.1.1 0.765
3m6i NADL-arabinitol 4-dehydrogenase 1.1.1.12 0.764
1ma0 NADAlcohol dehydrogenase class-3 1.1.1.1 0.763
1p0f NAPNADP-dependent alcohol dehydrogenase 1.1.1.2 0.754
3uko NADAlcohol dehydrogenase class-3 / 0.745
4jnk NAIL-lactate dehydrogenase A chain 1.1.1.27 0.745
1u8x NADMaltose-6'-phosphate glucosidase 3.2.1.122 0.744
2ekl NADD-3-phosphoglycerate dehydrogenase / 0.744
2o4c NADErythronate-4-phosphate dehydrogenase / 0.744
4j49 NADUncharacterized protein / 0.743
1lld NADL-lactate dehydrogenase 2 1.1.1.27 0.742
1pzh NADLactate dehydrogenase / 0.741
1uxj NADMalate dehydrogenase / 0.741
4jk3 NADUncharacterized protein / 0.741
4mdh NADMalate dehydrogenase, cytoplasmic 1.1.1.37 0.740
1pl8 NADSorbitol dehydrogenase 1.1.1.14 0.738
2vwh NAPGlucose 1-dehydrogenase / 0.738
1cdo NADAlcohol dehydrogenase 1 1.1.1.1 0.737
3cin NADMyo-inositol-1-phosphate synthase-related protein / 0.737
1sow NADL-lactate dehydrogenase 1.1.1.27 0.734
4gl4 NAIAlcohol dehydrogenase class-3 / 0.733
4nd4 NADLactate dehydrogenase, adjacent gene encodes predicted malate dehydrogenase / 0.732
1teh NADAlcohol dehydrogenase class-3 1.1.1.1 0.731
2g76 NADD-3-phosphoglycerate dehydrogenase 1.1.1.95 0.731
2dph NADFormaldehyde dismutase / 0.730
4ejm NAPPutative zinc-binding dehydrogenase / 0.730
2vhz NAIAlanine dehydrogenase 1.4.1.1 0.729
4i1i NADMalate dehydrogenase / 0.727
4okn NAIL-lactate dehydrogenase A chain 1.1.1.27 0.726
1uxk NADMalate dehydrogenase / 0.722
4cpd NADAlcohol dehydrogenase / 0.720
2vhx NADAlanine dehydrogenase 1.4.1.1 0.719
2a94 AP0L-lactate dehydrogenase 1.1.1.27 0.718
3d4p NADL-lactate dehydrogenase 1 1.1.1.27 0.718
2vhv NAIAlanine dehydrogenase 1.4.1.1 0.716
4j4b NAIUncharacterized protein / 0.716
2voj NADAlanine dehydrogenase 1.4.1.1 0.714
1gv0 NADMalate dehydrogenase / 0.713
4l0q NADAlcohol dehydrogenase class-3 / 0.713
3oet NADErythronate-4-phosphate dehydrogenase / 0.712
4rvu NDPProbable quinone reductase Qor (NADPH:quinone reductase) (Zeta-crystallin homolog protein) / 0.712
4k28 NADShikimate dehydrogenase family protein / 0.710
1f8f NADBenzyl alcohol dehydrogenase / 0.709
4nd2 A3DLactate dehydrogenase, adjacent gene encodes predicted malate dehydrogenase / 0.709
2ldb NADL-lactate dehydrogenase 1.1.1.27 0.708
4b7x NAPProbable oxidoreductase / 0.707
1pzf A3DLactate dehydrogenase / 0.704
4l4s NAIL-lactate dehydrogenase A chain 1.1.1.27 0.704
1j5p NADL-aspartate dehydrogenase 1.4.1.21 0.702
1pzg A3DLactate dehydrogenase / 0.702
1wze NADMalate dehydrogenase / 0.702
2dfd NADMalate dehydrogenase, mitochondrial 1.1.1.37 0.702
3adp NAILambda-crystallin 1.1.1.45 0.702
2d8a NADL-threonine 3-dehydrogenase / 0.700
1b8u NADMalate dehydrogenase / 0.699
1yb5 NAPQuinone oxidoreductase 1.6.5.5 0.699
4j49 NAIUncharacterized protein / 0.697
1f0y NADHydroxyacyl-coenzyme A dehydrogenase, mitochondrial 1.1.1.35 0.696
1ib6 NADMalate dehydrogenase / 0.696
4xrg NADHomospermidine synthase 2.5.1.44 0.695
5mdh NADMalate dehydrogenase, cytoplasmic 1.1.1.37 0.695
1guy NADMalate dehydrogenase / 0.694
2dt5 NADRedox-sensing transcriptional repressor Rex / 0.693
2vhw NAIAlanine dehydrogenase 1.4.1.1 0.693
2y05 NAPProstaglandin reductase 1 / 0.693
2x0r NADMalate dehydrogenase / 0.692
1wwk NAD307aa long hypothetical phosphoglycerate dehydrogenase / 0.691
3d64 NADAdenosylhomocysteinase / 0.691
1o8c NDPProbable acrylyl-CoA reductase AcuI 1.3.1.84 0.690
4xqc NADHomospermidine synthase 2.5.1.44 0.690
4nu5 NADPhosphonate dehydrogenase 1.20.1.1 0.689
5a1t NAIL-lactate dehydrogenase / 0.689
1b8v NADMalate dehydrogenase / 0.687
1ur5 NADMalate dehydrogenase / 0.687
2dfv NADL-threonine 3-dehydrogenase / 0.687
4xq9 NADHomospermidine synthase 2.5.1.44 0.686
1ez4 NADL-lactate dehydrogenase 1.1.1.27 0.685
3qwb NDPProbable quinone oxidoreductase 1.6.5.5 0.685
4hfm NAP2-alkenal reductase (NADP(+)-dependent) / 0.685
1ie3 NADMalate dehydrogenase / 0.683
2dc1 NADProbable L-aspartate dehydrogenase / 0.683
1lso NADHydroxyacyl-coenzyme A dehydrogenase, mitochondrial 1.1.1.35 0.682
3ikt NADRedox-sensing transcriptional repressor Rex / 0.682
3x2e NAIAdenosylhomocysteinase / 0.682
2ome NADC-terminal-binding protein 2 / 0.681
3wsw NADL-lactate dehydrogenase / 0.681
2p9c NAID-3-phosphoglycerate dehydrogenase 1.1.1.95 0.680
1agn NADAlcohol dehydrogenase class 4 mu/sigma chain 1.1.1.1 0.677
2fn7 NADLactate dehydrogenase, adjacent gene encodes predicted malate dehydrogenase / 0.677
2npx NADNADH peroxidase 1.11.1.1 0.677
1c1d NAIPhenylalanine dehydrogenase / 0.676
2yy7 NADL-threonine dehydrogenase / 0.675
3ggo NAIPrephenate dehydrogenase / 0.675
4wlu NADMalate dehydrogenase, mitochondrial 1.1.1.37 0.675
4ywj NAD4-hydroxy-tetrahydrodipicolinate reductase / 0.675
1il0 NADHydroxyacyl-coenzyme A dehydrogenase, mitochondrial 1.1.1.35 0.674
1kev NDPNADP-dependent isopropanol dehydrogenase 1.1.1.80 0.674
1m75 NADHydroxyacyl-coenzyme A dehydrogenase, mitochondrial 1.1.1.35 0.674
1psd NADD-3-phosphoglycerate dehydrogenase 1.1.1.95 0.671
2aa3 AP0L-lactate dehydrogenase / 0.671
2hu2 NADC-terminal binding protein 1 / 0.671
5a02 NAPGlucose-fructose oxidoreductase / 0.671
5a04 NDPGlucose-fructose oxidoreductase / 0.671
1m76 NADHydroxyacyl-coenzyme A dehydrogenase, mitochondrial 1.1.1.35 0.670
3ndr NADPyridoxal 4-dehydrogenase 1.1.1.107 0.670
3orf NADDihydropteridine reductase 1.5.1.34 0.670
3qvt NAIMyo-inositol-1-phosphate synthase (Ino1) / 0.669
4tvb NADHomospermidine synthase 2.5.1.44 0.669
1pj3 NADNAD-dependent malic enzyme, mitochondrial 1.1.1.38 0.668
3ggp NADPrephenate dehydrogenase / 0.667
4bv9 NDPKetimine reductase mu-crystallin 1.5.1.25 0.667
1bdm NAXMalate dehydrogenase / 0.666
1qor NDPQuinone oxidoreductase 1 / 0.666
2fze APRAlcohol dehydrogenase class-3 1.1.1.1 0.666
2ph5 NADHomospermidine synthase / 0.666
3pdu NAPGlyoxalate/3-oxopropanoate/4-oxobutanoate reductase / 0.666
3qvw NADMyo-inositol-1-phosphate synthase (Ino1) / 0.666
2dbz NAPGlyoxylate reductase 1.1.1.26 0.665
2pa3 NAID-3-phosphoglycerate dehydrogenase 1.1.1.95 0.665
3f3s NADLambda-crystallin homolog / 0.665
3qvs NADMyo-inositol-1-phosphate synthase (Ino1) / 0.665
4lcj NADC-terminal-binding protein 2 / 0.665
2q3e NAIUDP-glucose 6-dehydrogenase 1.1.1.22 0.664
2rcy NAPPyrroline-5-carboxylate reductase / 0.664
3qvx NADMyo-inositol-1-phosphate synthase (Ino1) / 0.664
4xb1 NDP319aa long hypothetical homoserine dehydrogenase / 0.664
2p9e NAID-3-phosphoglycerate dehydrogenase 1.1.1.95 0.663
1zmd NAIDihydrolipoyl dehydrogenase, mitochondrial 1.8.1.4 0.661
2cdc NAPGlucose 1-dehydrogenase / 0.661
3nug NADPyridoxal 4-dehydrogenase 1.1.1.107 0.661
1lsj NADHydroxyacyl-coenzyme A dehydrogenase, mitochondrial 1.1.1.35 0.660
3kb6 NADD-lactate dehydrogenase / 0.659
2gsd NADFormate dehydrogenase / 0.658
3abi NADUncharacterized protein / 0.658
4kug NAD3-hydroxybutyryl-CoA dehydrogenase / 0.658
3wyc NAPMeso-diaminopimelate D-dehydrogenase 1.4.1.16 0.657
1dss NADGlyceraldehyde-3-phosphate dehydrogenase 1.2.1.12 0.656
2p9g NAID-3-phosphoglycerate dehydrogenase 1.1.1.95 0.656
3pym NADGlyceraldehyde-3-phosphate dehydrogenase 3 1.2.1.12 0.656
4wlv NADMalate dehydrogenase, mitochondrial 1.1.1.37 0.656
4z3d NDPCarbonyl reductase [NADPH] 1 1.1.1.184 0.656
2yvg NADFerredoxin reductase / 0.655
2g82 NADGlyceraldehyde-3-phosphate dehydrogenase / 0.654
3ec7 NADInositol 2-dehydrogenase / 0.654
3pqf NADL-lactate dehydrogenase 1.1.1.27 0.654
1b3r NADAdenosylhomocysteinase 3.3.1.1 0.653
1dap NDPMeso-diaminopimelate D-dehydrogenase 1.4.1.16 0.653
2ejv NADL-threonine 3-dehydrogenase / 0.653
2x0i NAIMalate dehydrogenase / 0.653
3o9z NADLipopolysaccaride biosynthesis protein wbpB / 0.653
4rls NAIL-lactate dehydrogenase A chain 1.1.1.27 0.653
3toz NADShikimate dehydrogenase (NADP(+)) / 0.652
4plp NADHomospermidine synthase 2.5.1.44 0.652
1bmd NADMalate dehydrogenase / 0.651
1yl7 NAI4-hydroxy-tetrahydrodipicolinate reductase / 0.651
3zw9 NADPeroxisomal bifunctional enzyme 1.1.1.35 0.650
4e5n NADPhosphonate dehydrogenase 1.20.1.1 0.650