2.050 Å
X-ray
1995-09-29
Name: | Alcohol dehydrogenase 1 |
---|---|
ID: | ADH1_GADMC |
AC: | P26325 |
Organism: | Gadus morhua subsp. callarias |
Reign: | Eukaryota |
TaxID: | 8053 |
EC Number: | 1.1.1.1 |
Chain Name: | Percentage of Residues within binding site |
---|---|
A | 2 % |
B | 98 % |
B-Factor: | 8.972 |
---|---|
Number of residues: | 49 |
Including | |
Standard Amino Acids: | 43 |
Non Standard Amino Acids: | 1 |
Water Molecules: | 5 |
Cofactors: | |
Metals: | ZN |
Ligandability | Volume (Å3) |
---|---|
0.613 | 1890.000 |
% Hydrophobic | % Polar |
---|---|
49.82 | 50.18 |
According to VolSite |
HET Code: | NAD |
---|---|
Formula: | C21H26N7O14P2 |
Molecular weight: | 662.417 g/mol |
DrugBank ID: | - |
Buried Surface Area: | 54.3 % |
Polar Surface area: | 343.54 Å2 |
Number of | |
---|---|
H-Bond Acceptors: | 18 |
H-Bond Donors: | 6 |
Rings: | 5 |
Aromatic rings: | 3 |
Anionic atoms: | 2 |
Cationic atoms: | 1 |
Rule of Five Violation: | 3 |
Rotatable Bonds: | 11 |
X | Y | Z |
---|---|---|
17.2488 | 28.8302 | 56.6288 |
Represent the protein/ligand binding mode, centered on the ligand
Dashed lines represents hydrogen bonds and metal interactions
Green residue labels for amino acids with hydrophobic contacts (green lines) to the ligand
Ligand | Protein | Interaction | |||
---|---|---|---|---|---|
Atom | Atom | Residue | Distance (Å) | Angle (°) | Type |
C5N | SG | CYS- 46 | 4.3 | 0 | Hydrophobic |
C5N | SG | CYS- 175 | 3.98 | 0 | Hydrophobic |
C3N | CG2 | THR- 179 | 3.6 | 0 | Hydrophobic |
O2N | N | VAL- 204 | 3.03 | 157.91 | H-Bond (Protein Donor) |
C5D | CG2 | VAL- 204 | 4.17 | 0 | Hydrophobic |
O3B | OD2 | ASP- 224 | 2.81 | 157.07 | H-Bond (Ligand Donor) |
O2B | OD1 | ASP- 224 | 2.96 | 167.62 | H-Bond (Ligand Donor) |
O3B | NZ | LYS- 229 | 2.96 | 145.8 | H-Bond (Protein Donor) |
C1B | CG2 | VAL- 270 | 4.33 | 0 | Hydrophobic |
O3D | O | VAL- 270 | 2.63 | 145.44 | H-Bond (Ligand Donor) |
N7N | O | VAL- 293 | 2.99 | 159.08 | H-Bond (Ligand Donor) |
O2D | N | TRP- 295 | 2.88 | 155.88 | H-Bond (Protein Donor) |
N7N | O | SER- 317 | 2.96 | 163.51 | H-Bond (Ligand Donor) |
O7N | N | PHE- 319 | 2.87 | 174.06 | H-Bond (Protein Donor) |
O1N | NH1 | ARG- 369 | 3.29 | 165.25 | H-Bond (Protein Donor) |
O1A | O | HOH- 858 | 3.46 | 121.15 | H-Bond (Protein Donor) |
O2A | O | HOH- 859 | 2.58 | 179.95 | H-Bond (Protein Donor) |
O2N | O | HOH- 863 | 2.81 | 160.15 | H-Bond (Protein Donor) |
O1N | O | HOH- 1385 | 2.58 | 179.95 | H-Bond (Protein Donor) |