2.050 Å
X-ray
1995-09-29
| Name: | Alcohol dehydrogenase 1 |
|---|---|
| ID: | ADH1_GADMC |
| AC: | P26325 |
| Organism: | Gadus morhua subsp. callarias |
| Reign: | Eukaryota |
| TaxID: | 8053 |
| EC Number: | 1.1.1.1 |
| Chain Name: | Percentage of Residues within binding site |
|---|---|
| A | 2 % |
| B | 98 % |
| B-Factor: | 8.972 |
|---|---|
| Number of residues: | 49 |
| Including | |
| Standard Amino Acids: | 43 |
| Non Standard Amino Acids: | 1 |
| Water Molecules: | 5 |
| Cofactors: | |
| Metals: | ZN |
| Ligandability | Volume (Å3) |
|---|---|
| 0.613 | 1890.000 |
| % Hydrophobic | % Polar |
|---|---|
| 49.82 | 50.18 |
| According to VolSite | |

| HET Code: | NAD |
|---|---|
| Formula: | C21H26N7O14P2 |
| Molecular weight: | 662.417 g/mol |
| DrugBank ID: | - |
| Buried Surface Area: | 54.3 % |
| Polar Surface area: | 343.54 Å2 |
| Number of | |
|---|---|
| H-Bond Acceptors: | 18 |
| H-Bond Donors: | 6 |
| Rings: | 5 |
| Aromatic rings: | 3 |
| Anionic atoms: | 2 |
| Cationic atoms: | 1 |
| Rule of Five Violation: | 3 |
| Rotatable Bonds: | 11 |
| X | Y | Z |
|---|---|---|
| 17.2488 | 28.8302 | 56.6288 |
Image generated by PoseView
Represent the protein/ligand binding mode, centered on the ligand
Dashed lines represents hydrogen bonds and metal interactions
Green residue labels for amino acids with hydrophobic contacts (green lines) to the ligand
| Ligand | Protein | Interaction | |||
|---|---|---|---|---|---|
| Atom | Atom | Residue | Distance (Å) | Angle (°) | Type |
| C5N | SG | CYS- 46 | 4.3 | 0 | Hydrophobic |
| C5N | SG | CYS- 175 | 3.98 | 0 | Hydrophobic |
| C3N | CG2 | THR- 179 | 3.6 | 0 | Hydrophobic |
| O2N | N | VAL- 204 | 3.03 | 157.91 | H-Bond (Protein Donor) |
| C5D | CG2 | VAL- 204 | 4.17 | 0 | Hydrophobic |
| O3B | OD2 | ASP- 224 | 2.81 | 157.07 | H-Bond (Ligand Donor) |
| O2B | OD1 | ASP- 224 | 2.96 | 167.62 | H-Bond (Ligand Donor) |
| O3B | NZ | LYS- 229 | 2.96 | 145.8 | H-Bond (Protein Donor) |
| C1B | CG2 | VAL- 270 | 4.33 | 0 | Hydrophobic |
| O3D | O | VAL- 270 | 2.63 | 145.44 | H-Bond (Ligand Donor) |
| N7N | O | VAL- 293 | 2.99 | 159.08 | H-Bond (Ligand Donor) |
| O2D | N | TRP- 295 | 2.88 | 155.88 | H-Bond (Protein Donor) |
| N7N | O | SER- 317 | 2.96 | 163.51 | H-Bond (Ligand Donor) |
| O7N | N | PHE- 319 | 2.87 | 174.06 | H-Bond (Protein Donor) |
| O1N | NH1 | ARG- 369 | 3.29 | 165.25 | H-Bond (Protein Donor) |
| O1A | O | HOH- 858 | 3.46 | 121.15 | H-Bond (Protein Donor) |
| O2A | O | HOH- 859 | 2.58 | 179.95 | H-Bond (Protein Donor) |
| O2N | O | HOH- 863 | 2.81 | 160.15 | H-Bond (Protein Donor) |
| O1N | O | HOH- 1385 | 2.58 | 179.95 | H-Bond (Protein Donor) |