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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
1pr1 FMB Purine nucleoside phosphorylase DeoD-type

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
1efz PRFQueuine tRNA-ribosyltransferase 2.4.2.29 0.744
1g7u PEP2-dehydro-3-deoxyphosphooctonate aldolase 2.5.1.55 0.744
1m3q ANGN-glycosylase/DNA lyase 3.2.2 0.744
1v2h GUNPurine nucleoside phosphorylase 2.4.2.1 0.744
4e5i 0N9Polymerase acidic protein / 0.744
4e5l DBHPolymerase acidic protein / 0.744
4ek9 EP4Histone-lysine N-methyltransferase, H3 lysine-79 specific 2.1.1.43 0.744
1pr1 FMBPurine nucleoside phosphorylase DeoD-type / 0.742
1pr0 NOSPurine nucleoside phosphorylase DeoD-type / 0.733
1pr6 XYAPurine nucleoside phosphorylase DeoD-type / 0.727
1k9s FM1Purine nucleoside phosphorylase DeoD-type / 0.723
1k9s FM2Purine nucleoside phosphorylase DeoD-type / 0.713
1pr4 MTPPurine nucleoside phosphorylase DeoD-type / 0.711
4ts9 FMCPurine nucleoside phosphorylase DeoD-type / 0.709
1pk9 2FAPurine nucleoside phosphorylase DeoD-type / 0.708
1pr5 TBNPurine nucleoside phosphorylase DeoD-type / 0.708
3uay ADNPurine nucleoside phosphorylase DeoD-type / 0.707
4dae 6CRPurine nucleoside phosphorylase DeoD-type 2.4.2.1 0.704
1je1 GMPPurine nucleoside phosphorylase / 0.701
1a69 FMBPurine nucleoside phosphorylase DeoD-type / 0.695
4tta FMCPurine nucleoside phosphorylase DeoD-type / 0.693
1tgv 5UDUridine phosphorylase 2.4.2.3 0.691
4tti FMCPurine nucleoside phosphorylase DeoD-type / 0.688
1odi ADNPurine nucleoside phosphorylase / 0.687
4ttj FMCPurine nucleoside phosphorylase DeoD-type / 0.687
3uaw ADNPurine nucleoside phosphorylase DeoD-type / 0.684
5c80 URIUridine phosphorylase / 0.684
3fow IMHPurine nucleoside phosphorylase / 0.680
2i4t UA2Purine nucleoside phosphorylase, putative / 0.678
4da8 BG2Purine nucleoside phosphorylase DeoD-type 2.4.2.1 0.676
1pke 2FDPurine nucleoside phosphorylase DeoD-type / 0.671
3uaz NOSPurine nucleoside phosphorylase DeoD-type / 0.671
1jdv ADNPurine nucleoside phosphorylase / 0.666
1nw4 IMHPurine nucleoside phosphorylase / 0.663
1ozq PRFQueuine tRNA-ribosyltransferase 2.4.2.29 0.660
1p0e PRFQueuine tRNA-ribosyltransferase 2.4.2.29 0.660
1q1g MTIPurine nucleoside phosphorylase / 0.660
1ulb GUNPurine nucleoside phosphorylase 2.4.2.1 0.660
2pot GUNQueuine tRNA-ribosyltransferase 2.4.2.29 0.660
2z1x PRFQueuine tRNA-ribosyltransferase 2.4.2.29 0.660
3bld PRFQueuine tRNA-ribosyltransferase 2.4.2.29 0.660
3uax NOSPurine nucleoside phosphorylase DeoD-type / 0.660
4e5f 0N7Polymerase acidic protein / 0.660
4gcx PRFQueuine tRNA-ribosyltransferase 2.4.2.29 0.660
4h7z GUNQueuine tRNA-ribosyltransferase 2.4.2.29 0.660
2hwu URIUridine phosphorylase 2.4.2.3 0.658
1odj GMPPurine nucleoside phosphorylase / 0.655
4da6 GA2Purine nucleoside phosphorylase DeoD-type 2.4.2.1 0.653
4dan 2FAPurine nucleoside phosphorylase DeoD-type 2.4.2.1 0.651