2.020 Å
X-ray
2003-07-19
Name: | Purine nucleoside phosphorylase |
---|---|
ID: | Q8I3X4_PLAF7 |
AC: | Q8I3X4 |
Organism: | Plasmodium falciparum |
Reign: | Eukaryota |
TaxID: | 36329 |
EC Number: | / |
Chain Name: | Percentage of Residues within binding site |
---|---|
A | 18 % |
B | 82 % |
B-Factor: | 31.879 |
---|---|
Number of residues: | 41 |
Including | |
Standard Amino Acids: | 39 |
Non Standard Amino Acids: | 0 |
Water Molecules: | 2 |
Cofactors: | |
Metals: |
Ligandability | Volume (Å3) |
---|---|
0.610 | 901.125 |
% Hydrophobic | % Polar |
---|---|
44.57 | 55.43 |
According to VolSite |
HET Code: | MTI |
---|---|
Formula: | C12H17N4O3S |
Molecular weight: | 297.353 g/mol |
DrugBank ID: | DB03881 |
Buried Surface Area: | 76.19 % |
Polar Surface area: | 139.62 Å2 |
Number of | |
---|---|
H-Bond Acceptors: | 5 |
H-Bond Donors: | 5 |
Rings: | 3 |
Aromatic rings: | 1 |
Anionic atoms: | 0 |
Cationic atoms: | 1 |
Rule of Five Violation: | 0 |
Rotatable Bonds: | 3 |
X | Y | Z |
---|---|---|
23.7534 | -12.5141 | 88.4107 |
Represent the protein/ligand binding mode, centered on the ligand
Dashed lines represents hydrogen bonds and metal interactions
Green residue labels for amino acids with hydrophobic contacts (green lines) to the ligand
Ligand | Protein | Interaction | |||
---|---|---|---|---|---|
Atom | Atom | Residue | Distance (Å) | Angle (°) | Type |
C3' | CG1 | VAL- 66 | 4.17 | 0 | Hydrophobic |
CS | CG1 | VAL- 66 | 3.54 | 0 | Hydrophobic |
CS | CG2 | VAL- 73 | 3.44 | 0 | Hydrophobic |
CS | CD1 | TYR- 160 | 3.38 | 0 | Hydrophobic |
C5' | CE1 | TYR- 160 | 3.91 | 0 | Hydrophobic |
C2' | CB | GLU- 182 | 4.14 | 0 | Hydrophobic |
CS | SD | MET- 183 | 3.44 | 0 | Hydrophobic |
C2' | CG | MET- 183 | 3.75 | 0 | Hydrophobic |
C3' | SD | MET- 183 | 3.76 | 0 | Hydrophobic |
O2' | N | MET- 183 | 2.95 | 139.35 | H-Bond (Protein Donor) |
O2' | OE2 | GLU- 184 | 3.5 | 120.84 | H-Bond (Protein Donor) |
O3' | OE2 | GLU- 184 | 2.72 | 163.53 | H-Bond (Protein Donor) |
N7 | OD1 | ASP- 206 | 2.73 | 149.73 | H-Bond (Ligand Donor) |
O6 | O | HOH- 677 | 2.59 | 179.97 | H-Bond (Protein Donor) |